Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01660 ATGGCGCAAGCTCCAGCGGAATACCATTTTTTCAACACGGCATTGTACGTTGGGGATCTTGACAGCAGCGTCACCGAAGATCAGCTCTATGATCACTTCAACGTGTTGCTTTATACCGCAAAAGCATTGAATGAGCTAAATTTCAGTGTGTTGAAAGGCAAACCCATTAGGGTAATGTACTCTAACCGGGACCCTACTCTTCGTAGGACTGGTGCAGCTAACCTTTTTATAAAGAATTTGGATAAGTCAATCGATCACAAGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCTATCTTGCAAGGTTGCGAGGGATGCTTCTGGCGTGTCTAAAGGTCATGCTTTTGTGCAGTTTGATAACGAAGCCTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCTTTCATGCGAAAGAAGGATAGAGAGGCTGTTCCTAGTGGTGACGCAAACTTTAGTAATGTTTATGTAAAAAACCTGTCGCATAAAATAACGGATGCTGAATTGGGGACAATTTTTGGAGAATATGGACCCATTACTAGTGCTGCAGTGATGAAAGATGCAGAAGGTAGATCAAAAGGTTTTGGTTTTGTCAATTTCACAAATGCTGCTGCTGCTAGAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTAGGCAGTGGTATGTTGGAAAAGCCCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCGTCAACCTTATAAGCAAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTAGGCAGTGGTATGTTGGAAAAGCCCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCGTCAACCTTATAAGCAAGGACGCAAATCGGGCTGTATCCGCACTGGTCGCGATCCTAGTTCCAGGACTTACGAGATTATTCCACCGGTGAATTGGGGGATTCGGATTGTGCCGGAGAAGAAGGCGTTTGTGATTGAGCGATTCGGGAAGTACGTTAAGACTCTTCCCTCTGGAATCCATTTTTTGATTCCTTTCGTTGATCGTATCGCTTATGTACATTCGCTCAAGGAGGAGGCTATTAACATTCCCGACCAGAGTGCTATTACCAAGGACAATGTCACCATCCTCATCGATGGAGTGCTTTATGTCAAGATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCTGTCATTCAACTGGCACAAACAACAATGCGTAGTGAGCTTGGTAAGATTACTCTTGACAAGACTTTTGAGGAAAGGGACACACTCAATGAAAAGATTGTGGAGGCCATTAATGTGGCTGCCAAAAGTTGGGGTCTGGAGTGCCTTCGATATGAAATAAGGGATATCTCTCCTCCACGTGGAGTGAGAGCAGCTATGGAGATGCAAGCAGAGGCAGAAAGAAAAACGAGAGCTCAAATTCTTGAATATGAAGGAGAAAGACAGGCACACATAAACATTGCCGATGGAAAGAAGAGTTCAGTGATCTTAGCATCAGAAGATACGAGGATGGATCAAGTTAACAGAGCCCAAGGTGAGGCTGAAGCCATCCTAGCTAAAGCAAAAGCAACAGCTGAGGGACTGGCTCATGTGTCAGCATCCCTAAAAGAAAATGGAGGACCAGAGGCAGCTAGTTTAAGGATTGCAGAGCAATATATTCAAGCTTTCAGTAATATAGCCAAGGAGGGCACAACAATGTTGCTTCCTAGCTCTGCATCCAATCCTGCACAACAAGGTGCACCACCTCGAATTCTAACGTACCCTACGAGGCCTCCTGAGATGACACCACAATTATTGTATGGGCAAACACATCGAGCAATCATAACTCAAACTGCATTTGGTTTCCAGCAACAGTTTTTTGGTGGAGGGACGGGTCCAGCGCCAGTCTTCTATCCAGTTCTTCTGCCGCCGCCCAGGGGACCCCAAGAAGCAGATGGGTCCAAGGGACCTATTTATCATAATCCTCCTCCTGCCCCCAATGCTCAAAATATTCGTCCGGAACCGAAAGGAACAGCTGAAGAAATGCCCCCTTTTATTGGCACTGGTCAGCCAATCCCAATTCAGGCCCTGGCAGCAGCCGTTGCCAATGCTACTACTCCTGATCAGCAGAGGATTCTGCTTGGGGAAACTTTATTCCCGTTAGTAGAAAAGCTGGTGCGTGATGCAGCACCAAAGGTTACTGGTATGCTTTTGGAGATGGACCATGCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCGACACAAAAGTTACTGACGCCATGTATTTGTTGAGAAAATTTGAAGAGATCAAACAATCGATCGACTAA 2400 0.4554 MAQAPAEYHFFNTALYVGDLDSSVTEDQLYDHFNVLLYTAKALNELNFSVLKGKPIRVMYSNRDPTLRRTGAANLFIKNLDKSIDHKDLFDVFATFGNILSCKVARDASGVSKGHAFVQFDNEASAKEATDRLNGMLLNDKKVYVGPFMRKKDREAVPSGDANFSNVYVKNLSHKITDAELGTIFGEYGPITSAAVMKDAEGRSKGFGFVNFTNAAAARARDALDGKTFDGRQWYVGKAQRKTERELELKERHEQNWKRQPYKQARDALDGKTFDGRQWYVGKAQRKTERELELKERHEQNWKRQPYKQGRKSGCIRTGRDPSSRTYEIIPPVNWGIRIVPEKKAFVIERFGKYVKTLPSGIHFLIPFVDRIAYVHSLKEEAINIPDQSAITKDNVTILIDGVLYVKIVDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKSWGLECLRYEIRDISPPRGVRAAMEMQAEAERKTRAQILEYEGERQAHINIADGKKSSVILASEDTRMDQVNRAQGEAEAILAKAKATAEGLAHVSASLKENGGPEAASLRIAEQYIQAFSNIAKEGTTMLLPSSASNPAQQGAPPRILTYPTRPPEMTPQLLYGQTHRAIITQTAFGFQQQFFGGGTGPAPVFYPVLLPPPRGPQEADGSKGPIYHNPPPAPNAQNIRPEPKGTAEEMPPFIGTGQPIPIQALAAAVANATTPDQQRILLGETLFPLVEKLVRDAAPKVTGMLLEMDHAEVLHLIESPDALDTKVTDAMYLLRKFEEIKQSID 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01660 799 Gene3D - 40 145 IPR012677 -
Spst9g01660 799 FunFam Polyadenylate-binding protein 67 154 - -
Spst9g01660 799 PRINTS Stomatin signature 469 487 IPR001972 GO:0016020
Spst9g01660 799 PRINTS Stomatin signature 390 411 IPR001972 GO:0016020
Spst9g01660 799 PRINTS Stomatin signature 445 468 IPR001972 GO:0016020
Spst9g01660 799 PRINTS Stomatin signature 342 364 IPR001972 GO:0016020
Spst9g01660 799 PRINTS Stomatin signature 488 509 IPR001972 GO:0016020
Spst9g01660 799 PRINTS Stomatin signature 425 442 IPR001972 GO:0016020
Spst9g01660 799 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 329 613 - -
Spst9g01660 799 MobiDBLite consensus disorder prediction 300 321 - -
Spst9g01660 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 143 IPR000504 GO:0003723
Spst9g01660 799 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Spst9g01660 799 Gene3D - 69 123 IPR012677 -
Spst9g01660 799 SUPERFAMILY PABC (PABP) domain 720 795 IPR036053 GO:0003723
Spst9g01660 799 SUPERFAMILY Band 7/SPFH domain 366 499 IPR036013 -
Spst9g01660 799 Gene3D - 711 793 - -
Spst9g01660 799 SMART PHB_4 335 493 IPR001107 -
Spst9g01660 799 Pfam C-terminal region of band_7 559 606 IPR032435 -
Spst9g01660 799 Pfam SPFH domain / Band 7 family 339 509 IPR001107 -
Spst9g01660 799 SUPERFAMILY RNA-binding domain, RBD 160 246 IPR035979 GO:0003676
Spst9g01660 799 CDD RRM2_I_PABPs 71 147 IPR045305 -
Spst9g01660 799 MobiDBLite consensus disorder prediction 666 703 - -
Spst9g01660 799 SMART rrm1_1 14 59 IPR000504 GO:0003723
Spst9g01660 799 SMART rrm1_1 74 146 IPR000504 GO:0003723
Spst9g01660 799 SMART rrm1_1 166 237 IPR000504 GO:0003723
Spst9g01660 799 SMART poly_2 728 791 IPR002004 GO:0003723
Spst9g01660 799 CDD SPFH_paraslipin 373 483 - -
Spst9g01660 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Spst9g01660 799 SUPERFAMILY RNA-binding domain, RBD 13 153 IPR035979 GO:0003676
Spst9g01660 799 Pfam Poly-adenylate binding protein, unique domain 726 788 IPR002004 GO:0003723
Spst9g01660 799 Gene3D - 160 263 IPR012677 -
Spst9g01660 799 FunFam Stomatin-like protein 2, mitochondrial 363 495 - -
Spst9g01660 799 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Spst9g01660 799 ProSiteProfiles Forkhead-associated (FHA) domain profile. 94 143 IPR000253 GO:0005515
Spst9g01660 799 Gene3D Band 7 domain 363 495 IPR036013 -
Spst9g01660 799 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 716 793 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01660 Spst-Chr9 16827460 16833720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01660 611 789 Eukaryotic Initiation Factors Gene Family AT4G34110 41.451 5.51e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01660 K26392 - gmx:100809006 523.857