LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01643	ATGGGCAGCGTTAGTAACATTGGCTTCGCTTCAGTGTTCAAAGTACCTTTGGATACGCAACTCCTTTCAAAGCAGATTCGGAACAAATCACCATGCGGATATATAGTTCCTCCTTATCTTAACTACTCTGTTAGCCTCACTCCAATATGTTGTAAACTGTCAGAAAGTGGGATTCAGGAGAACCTCACCACCCCCAGCAAGAGGATTTACAAGACCAAGGACAGGATGGAGGAGTACAACATAGCTATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATAACGGACTACTTGATCGTGGGCTCCCAACCGCAGAAACCCGAAGACATAGATCACCTCAAAAAAGAAGAGGGTGTGGCATACATTCTAAATTTGCAACAGGATAAGGATGTAGAGTATTGGGGAGTAGATTTGCAGTCAATAATAAGAAGGTGTCATGAACTTGAAATTATCCACATGAGAAGACCGGCAAAAGACTTTGATCCAGGATCCTTGCGAAGTGAACTACCTAAAGCAGTTGCATCCTTAAATTGGGCTGTTTCTGAGGGGAAAGGAAGAGTTTATGTACATTGTACTGCAGGGCTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGGCATGAATCTAAATGGAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAACAAAACAGCAATACGTGGAGCTACCTATGATTTGGCTAAGAATGATCCATGCAAGGAGCCATTTGAGAATCTTCCAGAATATGCGTTTGAGGATATAGCAGACTGGGAAAGAAACTTGATTCAAAATCGTGTTTCTACATATCTGATATTCCTACATGGATTGCCACCCTTGCTGGGATGGTCCCAGGTCCCATGA	915	0.4262	MGSVSNIGFASVFKVPLDTQLLSKQIRNKSPCGYIVPPYLNYSVSLTPICCKLSESGIQENLTTPSKRIYKTKDRMEEYNIAMKRMMRNPYEYHHDLGMNYTLITDYLIVGSQPQKPEDIDHLKKEEGVAYILNLQQDKDVEYWGVDLQSIIRRCHELEIIHMRRPAKDFDPGSLRSELPKAVASLNWAVSEGKGRVYVHCTAGLGRAPAVAIAYLFWFCGMNLNGAYDMLTSKRPCGPNKTAIRGATYDLAKNDPCKEPFENLPEYAFEDIADWERNLIQNRVSTYLIFLHGLPPLLGWSQVP	304

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01643	304	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	97	242	IPR029021	-
	Spst9g01643	304	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	177	236	IPR000387	GO:0016311\|GO:0016791
	Spst9g01643	304	Gene3D	Protein tyrosine phosphatase superfamily	83	288	IPR029021	-
	Spst9g01643	304	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	100	257	IPR020422	GO:0006470\|GO:0008138
	Spst9g01643	304	FunFam	Phosphoglucan phosphatase LSF2, chloroplastic	83	288	-	-
	Spst9g01643	304	CDD	DSP_laforin-like	99	246	IPR045204	GO:0019203
	Spst9g01643	304	SMART	dsp_5	100	242	IPR020422	GO:0006470\|GO:0008138
	Spst9g01643	304	PANTHER	DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN	49	257	-	-
	Spst9g01643	304	Pfam	Dual specificity phosphatase, catalytic domain	121	240	IPR000340	GO:0008138\|GO:0016311

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01643	Spst-Chr9	16619583	16622226	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01643	40	284	Protein tyrosine phosphatase (PTP) family	AT3G10940	74.286	1.05e-135	384

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01643	-		-	gmx:100787079	487.263

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