Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g01633 | ATGAAGCATTGTCATAGAAGGAGTCGTAAGTCTGATGAAGATGGAGGTTCAAATGTTCACACTAAGGTGTTGATTGATTTCATGTCAAAGGATAGTGACACAACTGGAGAAGGGATAGTAAACAAAGAGAACACATTCTCTTGTAACTATTGCAAGAGAGAGTTTTCTACCTCACAAGCTTTAGGAGGCCACCAAAATGCACATAAGCAAGAACGTGCTCTTGCAAGACGACGTCAAGGTTCTGAAGTGAGTGGGTTAGGACATTTTCCTTATCACCCTTATTATCCAACCTTTTATAACTCTCATTCTCTTGGGTCTTTTAGAACACCAGGGATCCGAACTGACTCCATGATTCATAAGATTCCTTGGGCTTCAAGGTATGAACATGCATTCTTTAAAAAGAATCACGGAACATCAATGTTTGATGGGTTTGACATTATGAAAAGTGATTATCCAATCAAGAAAAGTTATACATCTCCAAATTTTAAGATAGATGATGAGGAGGATAAAACCTACAGTGAAACACTCTCCCTTTTTCCTACAGTTCCAAGCCAACTCAGAAATATGCAAACACTCGCAGTACCAGTAATTGATTATCACTCCACTCAAAGAGAAACTTCTCATCAAGAGTCTTACAATCTTGATTTGACACTCAAGCTTTAA | 663 | 0.3816 | MKHCHRRSRKSDEDGGSNVHTKVLIDFMSKDSDTTGEGIVNKENTFSCNYCKREFSTSQALGGHQNAHKQERALARRRQGSEVSGLGHFPYHPYYPTFYNSHSLGSFRTPGIRTDSMIHKIPWASRYEHAFFKKNHGTSMFDGFDIMKSDYPIKKSYTSPNFKIDDEEDKTYSETLSLFPTVPSQLRNMQTLAVPVIDYHSTQRETSHQESYNLDLTLKL | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g01633 | 220 | Gene3D | Classic Zinc Finger | 25 | 85 | - | - | |
Spst9g01633 | 220 | Pfam | C2H2-type zinc finger | 46 | 70 | - | - | |
Spst9g01633 | 220 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 46 | 73 | IPR013087 | - | |
Spst9g01633 | 220 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 48 | 68 | IPR013087 | - | |
Spst9g01633 | 220 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 23 | 220 | IPR044246 | GO:0009788 | |
Spst9g01633 | 220 | SUPERFAMILY | beta-beta-alpha zinc fingers | 42 | 73 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g01633 | Spst-Chr9 | 16545134 | 16545796 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst9g01633 | 10 | 121 | C2H2 Transcription Factor Family | AT5G25160 | 40.000 | 7.56e-17 | 74.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Spst9g01633 | zf-C2H2_6 | 2.3e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g01633 | - | - | pvu:PHAVU_009G043700g | 212.616 |