Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01633 ATGAAGCATTGTCATAGAAGGAGTCGTAAGTCTGATGAAGATGGAGGTTCAAATGTTCACACTAAGGTGTTGATTGATTTCATGTCAAAGGATAGTGACACAACTGGAGAAGGGATAGTAAACAAAGAGAACACATTCTCTTGTAACTATTGCAAGAGAGAGTTTTCTACCTCACAAGCTTTAGGAGGCCACCAAAATGCACATAAGCAAGAACGTGCTCTTGCAAGACGACGTCAAGGTTCTGAAGTGAGTGGGTTAGGACATTTTCCTTATCACCCTTATTATCCAACCTTTTATAACTCTCATTCTCTTGGGTCTTTTAGAACACCAGGGATCCGAACTGACTCCATGATTCATAAGATTCCTTGGGCTTCAAGGTATGAACATGCATTCTTTAAAAAGAATCACGGAACATCAATGTTTGATGGGTTTGACATTATGAAAAGTGATTATCCAATCAAGAAAAGTTATACATCTCCAAATTTTAAGATAGATGATGAGGAGGATAAAACCTACAGTGAAACACTCTCCCTTTTTCCTACAGTTCCAAGCCAACTCAGAAATATGCAAACACTCGCAGTACCAGTAATTGATTATCACTCCACTCAAAGAGAAACTTCTCATCAAGAGTCTTACAATCTTGATTTGACACTCAAGCTTTAA 663 0.3816 MKHCHRRSRKSDEDGGSNVHTKVLIDFMSKDSDTTGEGIVNKENTFSCNYCKREFSTSQALGGHQNAHKQERALARRRQGSEVSGLGHFPYHPYYPTFYNSHSLGSFRTPGIRTDSMIHKIPWASRYEHAFFKKNHGTSMFDGFDIMKSDYPIKKSYTSPNFKIDDEEDKTYSETLSLFPTVPSQLRNMQTLAVPVIDYHSTQRETSHQESYNLDLTLKL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01633 220 Gene3D Classic Zinc Finger 25 85 - -
Spst9g01633 220 Pfam C2H2-type zinc finger 46 70 - -
Spst9g01633 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Spst9g01633 220 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Spst9g01633 220 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 220 IPR044246 GO:0009788
Spst9g01633 220 SUPERFAMILY beta-beta-alpha zinc fingers 42 73 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01633 Spst-Chr9 16545134 16545796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01633 10 121 C2H2 Transcription Factor Family AT5G25160 40.000 7.56e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst9g01633 zf-C2H2_6 2.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01633 - - pvu:PHAVU_009G043700g 212.616