Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01622 ATGTGCGCCTTGATTCTTGCTCGACGTTCCAAAAAATGTGAATCAGTTTTTGTGGCTTTGGCTCTCTCTTTAGACCTCACAAACGCTATGTTGTCTCATTCGATAAACTTCTCCTATCTCACATCTTCTCTAAGCCCTTCAATGGCCATTGCAGCAACCTCCACCATCTCCCTTCTCTTCTTTGTTCTTAATCTATGCCTCCAAGCAACTTTTGGTGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTCTATGGCGGGGGAGATGCATCAGGCACAATGGGTAAGTTCAAAGTGTTTTTTCAGAGTTTGAACAACTGTCTTGTCTTTTCATTTTGGCACATAAATTTTGTTGTATTGTGGTGGTGCCCATACATAACCTTGGGAGGGGCTTGTGGTTATGGCAACTTGTACAGCCAAGGGTATGGTACTAACACAGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGCGGGTCTTGCTATGAGATGAGATGTGACGCTGACCCCAAATGGTGCCTCCCCGGTAGCATAATCGTCACTGCCACAAACTTCTGCCCCCCTAACTTTGCATTGGCTAATAACAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTTGATCTTGCCGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTCTCCTGTGTGAAGAAAGGAGGGATCAGGTTCACCATCAATGGACACTCATACTTCAACTTGGTTCTGGTCACAAATGTCGGTGGAGCTGGAGATGTTCACTCTGTGTCCATCAAGGGGTCTAGGACTGGTTGGCAAACCATGTCTAGAAACTGGGGCCAGAATTGGCAAAGCAACTCTTACCTGAATGGCCAAAGCCTCTCTTTTCAGGTTACTACAAGTGATGGTAGAACTGTCACCAACAACGACATTGTGCCTGCTAACTGGCAATTTGGTCAAACATTTGAAGGGGCACAGTTCTAG 1005 0.4607 MCALILARRSKKCESVFVALALSLDLTNAMLSHSINFSYLTSSLSPSMAIAATSTISLLFFVLNLCLQATFGDYGGGWQGGHATFYGGGDASGTMGKFKVFFQSLNNCLVFSFWHINFVVLWWCPYITLGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDADPKWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTNNDIVPANWQFGQTFEGAQF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01622 334 PRINTS Expansin signature 200 217 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 288 309 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 241 253 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 181 191 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 317 333 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 142 156 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 169 180 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 217 230 IPR002963 GO:0009664
Spst9g01622 334 PRINTS Expansin signature 253 274 IPR002963 GO:0009664
Spst9g01622 334 SUPERFAMILY Barwin-like endoglucanases 113 260 IPR036908 -
Spst9g01622 334 SMART dpbb_1 147 232 IPR007112 -
Spst9g01622 334 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 130 242 IPR007112 -
Spst9g01622 334 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 252 331 IPR007117 -
Spst9g01622 334 PRINTS Expansin/Lol pI family signature 77 92 IPR007118 GO:0005576
Spst9g01622 334 PRINTS Expansin/Lol pI family signature 317 331 IPR007118 GO:0005576
Spst9g01622 334 Pfam Lytic transglycolase 147 232 IPR009009 -
Spst9g01622 334 PANTHER EXPANSIN-A15 58 334 IPR002963 GO:0009664
Spst9g01622 334 Gene3D - 66 237 IPR036908 -
Spst9g01622 334 CDD DPBB_EXPA_N 82 237 - -
Spst9g01622 334 Pfam Expansin C-terminal domain 243 320 IPR007117 -
Spst9g01622 334 FunFam Expansin 242 334 - -
Spst9g01622 334 Gene3D - 241 334 IPR036749 -
Spst9g01622 334 SUPERFAMILY PHL pollen allergen 239 331 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01622 Spst-Chr9 16451358 16452940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01622 45 334 Expansin Gene Family AT2G40610 68.836 1.55e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01622 K20628 - gmx:547673 491.5