Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01620 ATGGCTCTTCGTCACCGTTTGTTGCTTGACACAAATTCAAGCACGCCTGCGCCAAGTAACATGAATAGGACAAGAGAGACTTTCACAGGTGATGCAAATTTTGACACCAATATGGTGATTATCTTGGCTGCGTTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTGAGATGTAGCCGCAGGTTTGCTTTTGAGACCCCAGAGGAGACTGCGGCACGTTTGGTGGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGTTGGTATTGCAGCCACAGATTGTCCAATTTGCCTTGGGGAGTTTGTGGATGGGGAGAAAGTAAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGACAATCTTTGCTTGAGCAACCAACTATTTCTGGAGCTGTAGCAGAAGGAACCAGTAACTATGCAGGGAATGTTTTAGGAGGACAGGAACATGTGTCTTTAGCAGTGCCTGTGGAAGAGGTTGGTTAA 585 0.4564 MALRHRLLLDTNSSTPAPSNMNRTRETFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVAEGTSNYAGNVLGGQEHVSLAVPVEEVG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01620 194 SUPERFAMILY RING/U-box 110 159 - -
Spst9g01620 194 CDD RING-H2_EL5-like 110 153 - -
Spst9g01620 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Spst9g01620 194 Pfam Ring finger domain 110 153 IPR001841 -
Spst9g01620 194 PANTHER RING-H2 FINGER PROTEIN ATL78 12 160 IPR044602 GO:0016567|GO:0016740
Spst9g01620 194 SMART FANCL_C_2 107 160 - -
Spst9g01620 194 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Spst9g01620 194 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01620 Spst-Chr9 16438095 16438679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01620 6 161 C3H Transcription Factor Family AT3G10910 62.424 1.84e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01620 - K19040 gmx:100787273 333.569