Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01617 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGACAACGGTCTCAGCTCCCCTCTCGTCTTCCAAGACGACCCTCTCCGCTTCAATTGCCCCACCCAGCAGCGCCGGGTCGGGGACCCGGGTCCCAAAACCCGCGAACTTGGTGCCTTCATTGACGACAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCCGACTTCCGCCGCTACGCCGACTGTTCCGCCCGCCGCGACCCCCGCAATTGGACCGTCAACGGCACCGCCGGCACTCCCAGTGAGGACGACGATTCCGACGAGGACGACGAAGATGACGAGGACGAGGATGACGAAGGCGACACCGAAGTAGAAGGACTCGTCGGTGATGGAAGCAAAGGCGAAATTATCAGTAACAACAACGGTACCAGTAGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACTCTTTTGTTTCTGGGAGAGAGTTGATGGGGAAGGATGGTGGAGAGATTGGGCAGTTGGTGCATAGCAGTGTGAGTGGTGGTGGTGATGAAGATCATCGGCCAGAGGGATTAGGTAAGTCTCAGAATTCTGTTACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGCTGAAGGGGCTTCTGGTCACAAAGTTATGGTGGATGATGGTGGTTGCGGGTTTAGTGGGAGAAAGGATGCGATGTATTCCACCGAGTCAGGAGAGTCACTCAGGAATATTCTTTCAGATCCCGTTACCGGAACACTTATGGATGATGCGATGATATTACCGTGTGGGCATTCATTTAGCGGAATTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCAACAACTGAGGAATCAATATCTCCTAACTTATCACTTCGAGCTGCTGTGCAGGCATATCGGCGGGAAGAGGAGTCTCAATTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGCTTTGGAGATTTATCTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTAATGGACCGGGTTGTCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGACGCGAAGCAATTGTAACAACACAATGCCTTAATGGATGGTATGTGGTGAAGACATTGGACAATGCTGAGAGTGTAAAGTTGCAGTATCGATCTCTTGCTAAGGTTTTGGATGATCCTTCAAAGCCCGCCTCCAGCAAGATGTCACCTAATTGGCTTTAG 1281 0.5051 MSSEDITLVPDQRIDNGLSSPLVFQDDPLRFNCPTQQRRVGDPGPKTRELGAFIDDKMFIDRDRFFAAQNPDFRRYADCSARRDPRNWTVNGTAGTPSEDDDSDEDDEDDEDEDDEGDTEVEGLVGDGSKGEIISNNNGTSSNLPSVANGKAHSFVSGRELMGKDGGEIGQLVHSSVSGGGDEDHRPEGLGKSQNSVTVAETDCEEYYSHYLQGAEGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGTLMDDAMILPCGHSFSGIGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDLSVMEPSRSRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASSKMSPNWL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01617 426 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 421 - -
Spst9g01617 426 MobiDBLite consensus disorder prediction 98 122 - -
Spst9g01617 426 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g01617 426 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
Spst9g01617 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Spst9g01617 426 SUPERFAMILY RING/U-box 247 319 - -
Spst9g01617 426 MobiDBLite consensus disorder prediction 131 150 - -
Spst9g01617 426 Pfam U-box domain 252 317 IPR003613 GO:0004842|GO:0016567
Spst9g01617 426 MobiDBLite consensus disorder prediction 84 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01617 Spst-Chr9 16405966 16410392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01617 193 426 Plant U-box Gene Family AT5G05230 59.504 7.58e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01617 - - gmx:100786717 700.279