Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01607 ATGGCCGGTTTACCAGCGAGGTTCCGTCTACAACCCGCCGACGTCAAAGCCGCCGCCATGTGGGGAGTTGCGGCCGCCACCGGCGGACTCTACCTCGTTCAGGATTTGCGCACTGTGCCTTGTTTGGCCCTCACTTTGACGAGTTTACATACTGATCTGAAATTTAGTTTTCGAATGTTATTTTACGTTATCCACTGTTTCTTTTTCCCTGATCGCCGATGTAGCTGTCTGAACGGTTGGTTAATGGCTTTTTATTTGAAGTCTCGTGATGAATTGCGTCAACATTTGGATCTCTGTTTGTATAGCGCTATAGCACCATTCTGGAGGAGAGAGTGGTTGGGTTTGATGGAGAAGGAGCTGGTGGAATTGTACGACGCCGCCAAGAAGGCGGCGGACGCGGCCCTCTCTGGCGACGCCCAACCCGAGGAGACCCGATGCATCGATGCACTCGAACAGCTTAAGAAATTTCCCGTTAATTACAAGATTCTTGTTAGCACTCAGGTAGGCAAACATCTTAAAGTTCTCACCAAGCACCCAAGGCAGAAAATTCGGGCCTTTGCTATTGAGCTAATTGAGATATGGAAAGACATAATTATCAAGGAAACAAGCAAAAATAAAAACGGAGGTACTGAGAGTAAGGTTGAGTCGGCTAATGGGGAGAGATCTAAATCTGGGAAAATGCAGAAGTGTCCTTCAGTGAAGGTTGAAAAAGGTGAAACTGTCAAGGTTGAGAAAAATGATAGGAATGGTACATCAAAGTCAAGCGCAGAAAGTATGAAAAAGGTACAAAATGATGTCAAGAATGAGAAAGCTGATCGTGCTACAAGTGTCAAGGTGGAAAAGTCAGTGAAGGAGGTAAAGCCAGTTCCTGGAGCGAGGAAAATGTCATCCAGTTCTGCAACTCCCCCAAAGCTAACATCTATGATTAAATCGAATGATGCAACGAGAGACAAGATAAGGGAACTTCTCCATGAGGCTTTGTCCAAGGTCCCCGGAGAGGCTGATGAAGATCTTGTAGAGGTAGTCAATGCTTCTGATCCTATTCGAGTTGCTGTGACTGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGGGCGCAAAAGGTCAAGTACAGGTCCTTAATGTTTAACCTTAAGGACTCAAATAACCCTGATTTCCGCAGAAAAGTTCTGCTTGGTGTTGTAGAGCCTGAGCAACTGATCAACATGAGCACTGCAGAAATGGCTAGTGAACAAAGGAAGCAGGAAAATCAGAAAATCACAGAGAAAGCTTTGTTTGACTGTGAGCGTGGAGTTCAACCAAAGGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAGAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1452 0.4539 MAGLPARFRLQPADVKAAAMWGVAAATGGLYLVQDLRTVPCLALTLTSLHTDLKFSFRMLFYVIHCFFFPDRRCSCLNGWLMAFYLKSRDELRQHLDLCLYSAIAPFWRREWLGLMEKELVELYDAAKKAADAALSGDAQPEETRCIDALEQLKKFPVNYKILVSTQVGKHLKVLTKHPRQKIRAFAIELIEIWKDIIIKETSKNKNGGTESKVESANGERSKSGKMQKCPSVKVEKGETVKVEKNDRNGTSKSSAESMKKVQNDVKNEKADRATSVKVEKSVKEVKPVPGARKMSSSSATPPKLTSMIKSNDATRDKIRELLHEALSKVPGEADEDLVEVVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTAEMASEQRKQENQKITEKALFDCERGVQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01607 483 Gene3D - 412 483 - -
Spst9g01607 483 MobiDBLite consensus disorder prediction 294 308 - -
Spst9g01607 483 ProSiteProfiles TFIIS central domain profile. 315 438 IPR003618 GO:0006351
Spst9g01607 483 MobiDBLite consensus disorder prediction 260 288 - -
Spst9g01607 483 SUPERFAMILY Elongation factor TFIIS domain 2 299 413 IPR036575 GO:0006351
Spst9g01607 483 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 115 213 IPR035441 -
Spst9g01607 483 MobiDBLite consensus disorder prediction 205 308 - -
Spst9g01607 483 Pfam TFIIS helical bundle-like domain 149 198 IPR017923 -
Spst9g01607 483 Gene3D - 293 411 IPR036575 GO:0006351
Spst9g01607 483 SUPERFAMILY Zinc beta-ribbon 422 481 - -
Spst9g01607 483 MobiDBLite consensus disorder prediction 230 251 - -
Spst9g01607 483 Pfam Transcription factor S-II (TFIIS) 443 481 IPR001222 GO:0003676|GO:0006351|GO:0008270
Spst9g01607 483 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 132 483 - -
Spst9g01607 483 FunFam Probable Transcription elongation factor S-II 412 483 - -
Spst9g01607 483 SMART Cys4_2 443 482 IPR001222 GO:0003676|GO:0006351|GO:0008270
Spst9g01607 483 ProSiteProfiles TFIIS N-terminal domain profile. 122 201 IPR017923 -
Spst9g01607 483 ProSiteProfiles Zinc finger TFIIS-type profile. 441 481 IPR001222 GO:0003676|GO:0006351|GO:0008270
Spst9g01607 483 Pfam Transcription factor S-II (TFIIS), central domain 312 429 IPR003618 GO:0006351
Spst9g01607 483 CDD Zn-ribbon_TFIIS 436 482 - -
Spst9g01607 483 NCBIfam transcription elongation factor S-II 129 483 IPR006289 GO:0003676|GO:0005634|GO:0006368
Spst9g01607 483 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 212 IPR035441 -
Spst9g01607 483 SMART mid_6 313 421 IPR003618 GO:0006351
Spst9g01607 483 ProSitePatterns Zinc finger TFIIS-type signature. 445 480 IPR001222 GO:0003676|GO:0006351|GO:0008270
Spst9g01607 483 SMART TFS2_5 123 200 IPR003617 GO:0005634
Spst9g01607 483 CDD TFIIS_I 138 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01607 Spst-Chr9 16280980 16292476 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst9g01607 TFIIS_M 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01607 K03145 - gmx:100811982 641.343