Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01600 ATGAAGTTGCTGTTCTCTATTGTTGCACTTGTTCTATTAGGCTCCACACTATCTCTCTGTGGCCTTATTGTAGCTGACTTAAAGTCTGACCAGCAAGCTCTGTTGGAGTTTGCTTCAAGTGTCCCACATGCCCCAAGGCTCAACTGGAAGAATGACTCTTCCACAATTTGCATCTCATGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGCCTTCACCTTCCAGGAATGGGATTAACTGGAACCATTCCAGAGAACGGCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCCAATGGCCTTAACGGAAAACTTCCTTCTAACATCCTCTCCATTCCTTCACTCCAATTTCTATACCTTCAGCACAATAGCTTCTCTGGCCCAATTCCTTCTCTTGTGTCACGTAAACTCTTTGCATTGGATATTTCCTTTAACTCCTTTTCTGGCAGCATCCCACCTGCATTTCAGAACCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGTCTCAAATTTTTGAACTTGAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCTTCTTTTGTTGGGAACTCTCTCTTGTGTGGGCCACCACTAAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTTCCACAGATGATTACCAGCCAATCACTCCACCAACCACCCAAAACCAAAAAGGTACCAACCATAAGAAAAGCTTTGGCCTGGCTACTATCCTTGCCCTAGTCATTGGGGTCTTTGCCTTCCTCTCTCTACTAGTTGTAGTGATCTGTGTGTTCTGTCTGAAGAGGAAGAAGAACAGTAAAAGCAGTGGAATACTGAAAGGAAAGGCTTCTTGTGCCGGAAAGACCGAGGTTTCAAAGAGTTTTGGTAGTGGGGTGCAAGGGGCAGAAAAAAACAAGCTCTTTTTCTTTGAAGGCTCCTCTTATAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTCGTTAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCAGTTAGAGATTGTGGGGAGATTTGGAAGCCACCCCAATGTGATGCCCCTAAGGGCCTATTACTATTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCCTGGTGGTAGCTTGTTTTTCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACCCCACTAGACTGGGATTCCAGAGTGAAGATTTTGCTTGGAGCTGCCAAGGGCATTGCTTTCATCCACTCTGAAGGGGGTCCAAAATTCACACATGGCGACATCAAGTCAAACAATGTGCTCATAACCCAAGAACTAGACAGCTGCATCTCTGATGTTGGATTGCCACCTCTAATGAACGCCCCAGCAACCATGTCCAGGGCCAATGGCTATAGAGCACCAGAAGTCACCGACACAAGGAAGATCACTCAGAAGTCTGATGTATACAGCTTTGGTGTGCTGCTGCTTGAAATGTTGACAGGGAAGACCCCACTGAGGTATCCCGGATATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTTGTGAGAGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTATGTTGAAGAGGAAATGGTGCAGATGCTCCAGATTGCATTAGCATGTGTAGCTAAGGGGCCAGAAAATAGGCCTAGAATGGATGAAGTTGTTAGAATGTTAGAGGAAATTAAGCATCCTGAGTTGAAGAACCGAATATCCTGTGAGTCCGAGTCTAATGTTCACACACCATGA 1920 0.4505 MKLLFSIVALVLLGSTLSLCGLIVADLKSDQQALLEFASSVPHAPRLNWKNDSSTICISWVGVTCNSNGTRVIGLHLPGMGLTGTIPENGIGKLDALRVLSLHSNGLNGKLPSNILSIPSLQFLYLQHNSFSGPIPSLVSRKLFALDISFNSFSGSIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPSLKFLNLSYNNLNGSIPNSIKTFPYSSFVGNSLLCGPPLNHCSTISPSPSPSTDDYQPITPPTTQNQKGTNHKKSFGLATILALVIGVFAFLSLLVVVICVFCLKRKKNSKSSGILKGKASCAGKTEVSKSFGSGVQGAEKNKLFFFEGSSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILLGAAKGIAFIHSEGGPKFTHGDIKSNNVLITQELDSCISDVGLPPLMNAPATMSRANGYRAPEVTDTRKITQKSDVYSFGVLLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGPENRPRMDEVVRMLEEIKHPELKNRISCESESNVHTP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01600 639 Pfam Leucine Rich Repeat 144 164 IPR001611 GO:0005515
Spst9g01600 639 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Spst9g01600 639 SMART serkin_6 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01600 639 SUPERFAMILY Protein kinase-like (PK-like) 352 620 IPR011009 -
Spst9g01600 639 FunFam pollen receptor-like kinase 1 316 423 - -
Spst9g01600 639 Gene3D Ribonuclease Inhibitor 23 85 IPR032675 -
Spst9g01600 639 Gene3D Ribonuclease Inhibitor 86 234 IPR032675 -
Spst9g01600 639 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Spst9g01600 639 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01600 639 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Spst9g01600 639 SUPERFAMILY L domain-like 38 227 - -
Spst9g01600 639 PANTHER OS05G0588300 PROTEIN 13 627 - -
Spst9g01600 639 CDD STKc_IRAK 354 619 - -
Spst9g01600 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 424 629 - -
Spst9g01600 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Spst9g01600 639 Pfam Protein kinase domain 352 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01600 639 ProSitePatterns Protein kinases ATP-binding region signature. 354 385 IPR017441 GO:0005524
Spst9g01600 639 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Spst9g01600 639 MobiDBLite consensus disorder prediction 233 258 - -
Spst9g01600 639 FunFam Nuclear pore complex protein NUP107 27 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01600 Spst-Chr9 16218959 16221518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01600 2 620 Receptor kinase-like Gene Family AT5G58300 61.290 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst9g01600 Pkinase 6.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01600 - - gmx:100818444 1144.8