Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01597 ATGGAATCTTCGCCGTCGTCTTCGTCGTCGTCGTCGTCATCTGGAAGCGATGCCAGCGGTGGTGGCGCTGTCACGTGGCTCGGGATGAGCTTCCCGTTCCGTTCTCCACTCTCTCTCGTGATGGATTACTGCACGCGCGAGGATTCCGCGGAGCCTGTGATCATCATTCCCCGCACGCGGCCGCGGTTTCAGGCTCCGGCCGAATCTGCTGCTTCGGCTTCTGATTCTGGCGAGAATGCGTGCAGCGGCGCTGAGGAGGTTGCAATACGCATTATTGGGGCCGGCGAGCAAGAGAGCGGTTCGTCGCCGTCGTCTTCGAGGAGCCGCGGAGGGGAACCGGGCTGTGAGGAGACGGTGGTTGGGAGAAGCGGGATGCTGTCGTCGGAGGCTCGCCGACGAATGGCTGAGGATAGGGTGCCGTTGGTGTCTTTGGATGATGGAATTGGTGGCGGTAGGGATTCTTCTTCGTCTTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCCAAGTGGATTGAACAGATTCTTCCGTTTTCCCTCTTGTTGTTGATTGTTTTCATCCGCCAGCATTTGCAAGGATTCTTTGTCACAATATGTATATCAGCTGTGATGTTCAAGTCGAATGAAATTGTTAAGAAGCAGACAGCCCTGAAGGGAGATCGGAAAGGCTCTGTTCTTCTTGGTATCTCTTTTGCCTTCATGCTGCTTGTCATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCATTGGTCATGCTTCCACCAAAAACAACTCCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGATACATTGGTGCGACAAGCAACTATGGCTTTCAAGTGTTTATTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGCCAAATGTTAACTCTGGTTGAGTACACTCTGTTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAAGATTATGGAAGTCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTACTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCGTTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAGCGGAACAGGTGAATGCTGCGGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGCGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACTTGCCCATTGTGCAGGGCATTGGTAAAACCAGCTGATCTTCGGACCTTCGGAGATGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA 1368 0.4861 MESSPSSSSSSSSSGSDASGGGAVTWLGMSFPFRSPLSLVMDYCTREDSAEPVIIIPRTRPRFQAPAESAASASDSGENACSGAEEVAIRIIGAGEQESGSSPSSSRSRGGEPGCEETVVGRSGMLSSEARRRMAEDRVPLVSLDDGIGGGRDSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKGSVLLGISFAFMLLVICIYWWYRNDDLLYPLVMLPPKTTPPFWHTIFIILVNDTLVRQATMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVLEKVQCFVSALKALSKKEVHYGVYATAEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01597 455 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g01597 455 CDD RING-HC_RNFT1-like 392 432 - -
Spst9g01597 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 442 IPR013083 -
Spst9g01597 455 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 68 455 IPR044235 GO:0061630|GO:1904294
Spst9g01597 455 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g01597 455 MobiDBLite consensus disorder prediction 97 111 - -
Spst9g01597 455 MobiDBLite consensus disorder prediction 94 131 - -
Spst9g01597 455 ProSitePatterns Zinc finger RING-type signature. 409 418 IPR017907 -
Spst9g01597 455 Pfam Zinc finger, C3HC4 type (RING finger) 392 435 - -
Spst9g01597 455 ProSiteProfiles Zinc finger RING-type profile. 394 432 IPR001841 -
Spst9g01597 455 SMART ring_2 394 431 IPR001841 -
Spst9g01597 455 SUPERFAMILY RING/U-box 388 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01597 Spst-Chr9 16179339 16186482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01597 58 455 C3H Transcription Factor Family AT5G01960 67.500 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01597 - K22379 gmx:100784614 776.548