Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01582 ATGGCTTCCAAGGTTGTGCAAATGGTGGACACTAATATGGCTGAGGAAAAAGGTGATGAGTGTAAGAAGAACGTGGTTATGACTCTCTCATTCTTCAAACTCTTGAGCTATGCTGACTTGGTAGATTGGATTCTGATGGGTTTGGGAACTCTTGGTTCCATTGTGCATGGCATGGCACTTCCCGTGGGGTATCTCTTGTTGGGGAAAGCTCTTAATGCTTTTGGAAACAATATCCAAGACATAGATGCCATGGTTAAGGCTCTTAAACAGATTATTCCATTTGTGTGGTATATGGCCATAGCCACATTTCCTGCAGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAGAGACAGTTATTTCGGCTAAGACTGGCATATCTAACAGCAGTCCTGAACCAAGAGATAGGAGCTTTTGATACAGAGTTAACAAGTGGGAAAGTCATCAGTGGAATAAGCAACCAAATGAGTGTCATACAAGATGCAATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCGTTGCAACTTTCTTTGCTGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGGCACTTCTCTGTTTAGTGGTTGTCCCACTTATTCTTATAATTGGGGCAACTTACACCAAGAAAATGAACAGCATATCAACCTCCAAAATGCTTTTCCATTCTGAAGCTACATCAATGATAGAGCAGACAATATCACAAATAAAAACAGTTTATGCTTTTGTTGGAGAGAGCTCTGCAACCAAATCCTTTACAGAGAACATGGAAAAGCAGTATATTATAAGCAAAGGGGAGGCACTTGTAAAAGGAGTTGGGACAGGGATGTTGCAAACAGTGAGTTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCCAGAAGAGCAACACCAGGAGACATAATAACTGCAGTGATGAGTATTCTCTTTGGTGCCATATCACTCACTTATGCAGCACCGGACATGCAAATATTCAATCAGGCAAAAGCTGCAGGATATGAAGTTTTCCAGGTGATCCAAAGAAAACCTCTGATAAGTAATGAAACAGAAGGGACGAAGCCTCGCAAAATCAAAGGTGACATCGAATTTCGAGACGTCCACTTTTCCTACCCATCACGGCCAGACAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCAGGAAAGACAGTAGCACTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTAGTTAGCAGATTTTATGATCCCTCAAGAGGAGTAATCTTTATTGACCATCACAATATCAAGGATCTTAATCTTAAGTTCCTTCGACGAAACATAGGAGCCGTTTCCCAAGAGCCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAGAGTGGGGAAAACGGACGCAGATGATCAAGAGATTCAGGAGGCAGCAGTAATGGCAAATGCACACTCTTTCATATCTCAGCTGCCTAATCAGTACCTAACAGACGTTGGACAAAGGGGCGTCCAATTATCAGGAGGCCAAAAACAGAGAGTTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTAGATGAAGCCACTAGCGCCCTCGATTCAGAATCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTACTCAGGGAAGGACTGTCATCTTGATTGCTCACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTGGTCGAGAACGGACAAGTTGCGGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATGGTACATTATTTAGCATGCAGAACCTTGAACCAGTTCCTGAATCCAGAGCTATGACTTCAAAGAATAGAAGCGCCCAACAAGAAGATTTTCCTAATGCAACTAGACCACCCGTAGAGGTGCAGCAAGAGGTCCAAAGAAATATTAATGAGCACTCTGTGCTAAAGGAACAAAAAAAAATGAGCAGCGGACAAAGAAATATTTTTTTCAGAATTTGGTTTGGTTTAAAAAAGAGAGAGCTGGTGAAGATTTCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATAGGAGTAGCATACTTTAAGGAAGATGCGAAAACGAAAGTTGGACTTTATTCAGCCATCTTCACTGCAGTAGGGATGCTTTCATTATTCAGCCACACCTTCCAGCATTACTTCTTCGGAGTGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTGCTCTGTATTCAGGTGTGTTACGTAATGAAGTAGGTTGGTTCGACAAATCAGAGAATACTGTTGGTTCATTGACTTCACGCATTATCAGTGACACTGCGATGGTAAAAGTCATCATTGCTGATCGAATGTCTGTAATCCTGCAATGTGTTTCCTCCATACTGATAGCAACAATTGTCAGCATGGCTGTCAACTGGAGAATGAGTTTGGTAGCTTGGTCTGTGATGCCCTGCCACTTCATAGGTGGTCTTATTCAAGCTAAGTCTGCCAAAGGCTTTTCCGGTGACTACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCCGAGTCCTCAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAACAGGTAATGAGGAAAGCCAAAACATCCCTGGAAATTCCAAAGAAAAATTATAGGAAAGAAAGTATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTATGGAACATTGCACATGCGGTTGCTCTGTGGTATACAACAATTCTGGTTGACAGACGTCAAGCCAGTTTTGAAAACGGAATAAGATCATATCAAATTTTTTCTCTCACAGTTCCCTCTATCACAGAATTATACACACTGATCCCAACTGTGGTTACTGCTATCAACATACTGACCCCAGCATTCAAAACCCTTGATCGTAAAACTGAAATTGAACCAGACACACCAGATGACTCACAACCTGAGAGGATCCAAGGAAATGTCGAATTTGAAACTGTAAAATTCAGCTACCCTTCAAGACCTGAAGTCACTGTTCTTGATAATTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCTGGAAAATCCTCAGTTTTGGCCCTTTTACTAAGATTTTATGATCCACAGGTGGGAAAAGTCTTAATTGATGGGAAAGACATACGGAAATATAACCTAAGATGGTTAAGGACACAAATAGGATTGGTACAACAAGAACCACTGCTTTTTAATTGCTCAATTAGAGACAACATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGCTGCTAAAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAAATGGATATAGCACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCCGGAGGACAAAAGCAAAGAATAGCAATTTCCAGAACATTATTAAAGAAGCCTGCAATTTTACTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAGGAATTATTGTAAATGCTCTAAAAGCAATACATCTAAAGGAAGACAGTGGCTTGTGCTCAAGAACCACCCAGATAACAGTAGCTCATAGGCTTTCCACAGTGATAAACTCAGATACTATAATTGTCATGGACAAAGGTAAAGTTGTAGAGAAGGGTTCCCACTCAACTCTTGTGGCAACAGAGTCAGGACTTTATTCGAGGATTTTCAGGTTACAGAGCTTCGAAGAAACTTCATAG 3765 0.4186 MASKVVQMVDTNMAEEKGDECKKNVVMTLSFFKLLSYADLVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIQDIDAMVKALKQIIPFVWYMAIATFPAGVLEIGCWMYASERQLFRLRLAYLTAVLNQEIGAFDTELTSGKVISGISNQMSVIQDAIGEKLGHFTSSVATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNSISTSKMLFHSEATSMIEQTISQIKTVYAFVGESSATKSFTENMEKQYIISKGEALVKGVGTGMLQTVSFCSWALIVWVGAVVVRARRATPGDIITAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNETEGTKPRKIKGDIEFRDVHFSYPSRPDKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLVSRFYDPSRGVIFIDHHNIKDLNLKFLRRNIGAVSQEPSLFAGTIKDNLRVGKTDADDQEIQEAAVMANAHSFISQLPNQYLTDVGQRGVQLSGGQKQRVAIARAILKNPPILLLDEATSALDSESEKLVQEALETATQGRTVILIAHRLSTVVNADMIAVVENGQVAETGTHQSLLDTSRFYGTLFSMQNLEPVPESRAMTSKNRSAQQEDFPNATRPPVEVQQEVQRNINEHSVLKEQKKMSSGQRNIFFRIWFGLKKRELVKISIGSFAAAFSGISKPFFGFYIITIGVAYFKEDAKTKVGLYSAIFTAVGMLSLFSHTFQHYFFGVVGEKAMANLRRALYSGVLRNEVGWFDKSENTVGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATIVSMAVNWRMSLVAWSVMPCHFIGGLIQAKSAKGFSGDYSAAHSELVALASESSTNIRTIASFCHEEQVMRKAKTSLEIPKKNYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVVTAINILTPAFKTLDRKTEIEPDTPDDSQPERIQGNVEFETVKFSYPSRPEVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQVGKVLIDGKDIRKYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEAAKEANIHEFVSNLPNGYSTVVGEKGCQLSGGQKQRIAISRTLLKKPAILLLDEATSALDAESEGIIVNALKAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKVVEKGSHSTLVATESGLYSRIFRLQSFEETS 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01582 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1246 IPR003439 GO:0005524
Spst9g01582 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst9g01582 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1248 IPR027417 -
Spst9g01582 1254 SMART AAA_5 396 588 IPR003593 GO:0016887
Spst9g01582 1254 SMART AAA_5 1029 1223 IPR003593 GO:0016887
Spst9g01582 1254 Gene3D - 359 607 IPR027417 -
Spst9g01582 1254 SUPERFAMILY ABC transporter transmembrane region 33 351 IPR036640 GO:0005524|GO:0016020
Spst9g01582 1254 Pfam ABC transporter 387 536 IPR003439 GO:0005524
Spst9g01582 1254 CDD ABC_MTABC3_MDL1_MDL2 369 606 - -
Spst9g01582 1254 Gene3D ABC transporter type 1, transmembrane domain 33 966 IPR036640 GO:0005524|GO:0016020
Spst9g01582 1254 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Spst9g01582 1254 FunFam ABC transporter B family member 1 992 1249 - -
Spst9g01582 1254 Pfam ABC transporter 1020 1169 IPR003439 GO:0005524
Spst9g01582 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst9g01582 1254 Pfam ABC transporter transmembrane region 684 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst9g01582 1254 Pfam ABC transporter transmembrane region 47 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst9g01582 1254 Gene3D - 992 1253 IPR027417 -
Spst9g01582 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Spst9g01582 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 606 IPR027417 -
Spst9g01582 1254 PANTHER ABC TRANSPORTER B FAMILY 7 736 IPR039421 -
Spst9g01582 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Spst9g01582 1254 SUPERFAMILY ABC transporter transmembrane region 673 988 IPR036640 GO:0005524|GO:0016020
Spst9g01582 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 985 - -
Spst9g01582 1254 CDD ABC_MTABC3_MDL1_MDL2 1002 1248 - -
Spst9g01582 1254 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524|GO:0016887
Spst9g01582 1254 FunFam ABC transporter B family member 4 359 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01582 Spst-Chr9 16052465 16059842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01582 19 1253 Calmodulin-binding Proteins AT2G36910 41.200 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01582 K05658 - qsa:O6P43_014878 1872.06