Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01558 ATGCACCGTGGAGGTCACAGGCTCACACCAAAAGCACTTGATACAATCTACAACCTGAGGCATATTAAAGTAACAAGCATGGGTTCAACAGGTGAGACTCAGATCACTCCGACCCATGTGTCTGATGAAGAGGCAAACCTGTTTGCCATGCAACTTGCCAGTGCCTCTGTCCTCCCAATGGTTCTCAAATCAGCTCTTGAGCTTGATCTGCTCGAAATCATTGCCAAAGCTGGCCCTGGAGCTCATCTTTCTCCCTCTCAAATTGTTTCTCAGCTCCCAACACACAACCCTGATGCCCCTGTTATGTTGGACCGCATATTACGCCTTTTGGCTTGCTACAATATCCTCTCTTTCACTCTTCGCACTCTCCCTGATGGCAAGGTTGAGAGGCTCTATGGTCTCGCCCCGGTTGCCAAATACTTGGTGAAGAACGAAGATGGTGTCTCCATTGCTGCTCTCAACCTTATGAACCAGGACAAAGTCCTCATGGAAAGCTGGTACTATTTGAAAGATGCAGTTCTTGAAGGGGGCATTCCATTTAACAAGGCATATGGAATGACAGCCTTTGAATACCACGGAACAGATCCAAGATTTAACAAGGTTTTCAACAAGGGTATGGCTGATCACTCGACCATCACAATGAAGAAAATTCTTGAGACCTACACAGGCTTTGAGGGTCTTAAATCTCTGGTTGATGTTGGGGGTGGAACTGGAGCAATCATAAACATGATAGTCTCAAAGTATCCCACCATTAGGGGTATTAACTTTGATTTAGCCCATGTCATCCAAGATGCCCCATCTTATCCAGGAGTGGAGCATGTCGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGACGCAATTTTCATGAAGTGGATTTGTCACGATTGGAGTGATGAACACTGCTTGAAGTTTTTGAAGAACTGCTACGAGGCACTTCCAGACAATGGGAAGGTGATTGTGGCAGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTGGCCACAAAGGGTGTGGTTCACATCGATGTGATAATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACAGAGAAAGAGTTTGAGGCTCTGGCCAAAGGGGCTGGATTCCAAGGTTTCCGTGTCTTATGTTGTGCTTTCAATACCTACATCATGGAGTTTCTCAAGAAGGTTTAA 1176 0.46 MHRGGHRLTPKALDTIYNLRHIKVTSMGSTGETQITPTHVSDEEANLFAMQLASASVLPMVLKSALELDLLEIIAKAGPGAHLSPSQIVSQLPTHNPDAPVMLDRILRLLACYNILSFTLRTLPDGKVERLYGLAPVAKYLVKNEDGVSIAALNLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMADHSTITMKKILETYTGFEGLKSLVDVGGGTGAIINMIVSKYPTIRGINFDLAHVIQDAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFRVLCCAFNTYIMEFLKKV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01558 391 FunFam Caffeic acid 3-O-methyltransferase 29 141 - -
Spst9g01558 391 Pfam Dimerisation domain 60 111 IPR012967 GO:0046983
Spst9g01558 391 Gene3D - 27 141 IPR036388 -
Spst9g01558 391 PANTHER O-METHYLTRANSFERASE 49 373 IPR016461 GO:0008168
Spst9g01558 391 PIRSF O-mtase 27 389 IPR016461 GO:0008168
Spst9g01558 391 Pfam O-methyltransferase domain 166 371 IPR001077 GO:0008171
Spst9g01558 391 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 50 389 IPR016461 GO:0008168
Spst9g01558 391 FunFam Caffeic acid O-methyltransferase 142 389 - -
Spst9g01558 391 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 387 IPR029063 -
Spst9g01558 391 CDD AdoMet_MTases 230 321 - -
Spst9g01558 391 Gene3D Vaccinia Virus protein VP39 142 389 IPR029063 -
Spst9g01558 391 SUPERFAMILY "Winged helix" DNA-binding domain 41 145 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01558 Spst-Chr9 15848815 15851195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01558 27 391 Monolignol Biosynthesis Gene Families AT5G54160 76.712 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01558 K13066 - gmx:100780100 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01558 9 15848815 15851195 Spst9g01558 9 15848815 15851195 ECH