Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01552 ATGGGGGAGGTGGTGATGAGTGGAGAGAAGTCAGTGAGAGTTGAGGAGGAGAGTGGGAGTGGGAGCAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTATGCCCAGGATGATTTTGAGGGTGTTATTAGTTGAAGCCGATGACTCCACAAGGCAGATTATAGCCGCGCTTCTCCGAAAATGCAGCTACAAAGTGGCTGCTGTTCCAGATGGCTTGAAGGCGTGGGAATTACTCAAGGGAAGACCTCACAATGTTGATTTAATACTGACGGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACGTTAATTATGGAGCATGACATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATCAGCACGGTATACAAATGCATGCTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAACTGCGGAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACTGGCATAAATGGTACCCAAGATGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCGGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGACGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGTTCTTGTACTAAGCCCGACTTGGAAGCTGAGACTGGCCCTGTTGATAACATGCAGGAATTTTCTCCTCCAAAATGTGGGGAAGAATATCCAAGTGGAGCAGAGACACAAGAGGTTGAAACCTGCATTCGATTAGGACAGACATTGATGATGCGTGACAGTCATGCTGGAGGATTAACTATACACAAAAATGGTGAGGCAAGCACAACTAATGGCAAGGTTGTTGATCCAGAGCATCTTAGGAATGCTAGCATCAGCGGTGAGGCTCATGACAATCACTATGTTCAAATTTCCAAGGAAGCTATTGACTTGATTGGAGCATTTCATACACATCCCAACTGCACGCTAAAAAATGCCACAGTTGATTGCACAGGCAAGGTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTCTGAGAATGAACTCAGTGAAGAAAGGCATACCCTGATGCATTCTAATGCTTCAGCCTTTAAGCGGTATACTAACAGGCAATTGCAAGTATTGACGCCTGCAGTGTTAAATAACTTCTCTGATCAACAAAGAGATCAGAGAACAAATGGTGAGAAAAGCATCTCACACATAGTTACTGGCTGCAACTCGGATAGTTCAACACCTGGTATGCCAAGATGTATAGTGTCTCCAACTACGGTCCATCCAAAAGAATCTGAACTTGCAACCTCACACTCTCAGCAAGGGCATTCTCGCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAATGTTTCGCACACAGTCAGGTCCACCAGCAATGCCAAATCCAAGTTCAGTTGTGCTCTTTGAACCAAACTTTCAAGTAAACGCATTTTATCAGTCAAACAGGAAAGAGAGTAGTTCGGAGCAGATTTATGAACCTCTTGGTCCAAATGGAAACAGTTCCCAGAACCACATTGTGTACACACAGGAACGTAAATCAGAACATGCAGAGGATCGAGGGCATATCTCTTCTACAACTGATCAAAGTGCGTCAAGTAGTTTCTGTCATGGAAACGCAAGCCATCTTAACAGCATTGGTTATGGAAACAACTGTGGAAGTAACAGCAATGTTGATCAAGTTACCACTGTCAGGGTAGCATCAGAGAGCAATAATGGGGACCTCACAAACAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTTCATCCTGATCCTCTTGTTGCAGAAGAAGATGGCCAAGAATATGATCATTCACAGATTTCTGACACACTGGAGAGGAGAGTATGA 2067 0.4373 MGEVVMSGEKSVRVEEESGSGSKGELKGLMRWEKFMPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGTQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAETGPVDNMQEFSPPKCGEEYPSGAETQEVETCIRLGQTLMMRDSHAGGLTIHKNGEASTTNGKVVDPEHLRNASISGEAHDNHYVQISKEAIDLIGAFHTHPNCTLKNATVDCTGKVDLSPQLDLSLRRSRPSSSENELSEERHTLMHSNASAFKRYTNRQLQVLTPAVLNNFSDQQRDQRTNGEKSISHIVTGCNSDSSTPGMPRCIVSPTTVHPKESELATSHSQQGHSRPIPVKGVRFNDLCTAYGSVLPSMFRTQSGPPAMPNPSSVVLFEPNFQVNAFYQSNRKESSSEQIYEPLGPNGNSSQNHIVYTQERKSEHAEDRGHISSTTDQSASSSFCHGNASHLNSIGYGNNCGSNSNVDQVTTVRVASESNNGDLTNNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEEDGQEYDHSQISDTLERRV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01552 688 Gene3D - 39 228 - -
Spst9g01552 688 Coils Coil 680 688 - -
Spst9g01552 688 Pfam Response regulator receiver domain 43 154 IPR001789 GO:0000160
Spst9g01552 688 MobiDBLite consensus disorder prediction 515 534 - -
Spst9g01552 688 MobiDBLite consensus disorder prediction 213 234 - -
Spst9g01552 688 ProSiteProfiles CCT domain profile. 618 660 IPR010402 GO:0005515
Spst9g01552 688 MobiDBLite consensus disorder prediction 542 565 - -
Spst9g01552 688 MobiDBLite consensus disorder prediction 1 24 - -
Spst9g01552 688 SUPERFAMILY CheY-like 41 168 IPR011006 -
Spst9g01552 688 CDD psREC_PRR 43 146 - -
Spst9g01552 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 242 IPR045279 GO:0009736
Spst9g01552 688 SMART REC_2 41 156 IPR001789 GO:0000160
Spst9g01552 688 MobiDBLite consensus disorder prediction 645 688 - -
Spst9g01552 688 MobiDBLite consensus disorder prediction 9 24 - -
Spst9g01552 688 MobiDBLite consensus disorder prediction 664 688 - -
Spst9g01552 688 ProSiteProfiles Response regulatory domain profile. 42 160 IPR001789 GO:0000160
Spst9g01552 688 Pfam CCT motif 618 660 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01552 Spst-Chr9 15746257 15750638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01552 316 662 Response Regulator Gene Family AT5G24470 32.312 7.10e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Spst9g01552 Response_reg 1.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01552 K12130 - gmx:100777119 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01552 9 15746257 15750638 Spst9g01552 9 15746257 15750638 ECH