Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01539 ATGAGTGGTCGCTTTTCTCGCACAATTTACGTGGGCAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTCGATAATGCTCGAGATGCCGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGAGGTAGAGGACCATCATCAAGTGATCGGCGTGGATATGGAGGTGGAGGTGGTGGTGGTGGTGGTGGGGGTGGTGGGGGTCGTTTTGGCATCTCACGCCACTCTGAATTTCGAGTTATTGTTCGTGGACTGCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCAAGAGCTTATATTCGG 570 0.4614 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01539 190 Gene3D - 2 116 IPR012677 -
Spst9g01539 190 Gene3D - 118 190 IPR012677 -
Spst9g01539 190 FunFam serine/arginine-rich splicing factor SR34A-like 118 190 - -
Spst9g01539 190 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 182 - -
Spst9g01539 190 SMART rrm1_1 119 188 IPR000504 GO:0003723
Spst9g01539 190 SMART rrm1_1 8 78 IPR000504 GO:0003723
Spst9g01539 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 182 IPR000504 GO:0003723
Spst9g01539 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Spst9g01539 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Spst9g01539 190 SUPERFAMILY RNA-binding domain, RBD 6 183 IPR035979 GO:0003676
Spst9g01539 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Spst9g01539 190 MobiDBLite consensus disorder prediction 81 108 - -
Spst9g01539 190 FunFam serine/arginine-rich splicing factor SR34A-like 2 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01539 Spst-Chr9 15631615 15635198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01539 8 176 Eukaryotic Initiation Factors Gene Family AT4G34110 24.000 1.09e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01539 K12890 - gmx:100786491 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01539 9 15631615 15635198 Spst9g01539 9 15631615 15635198 ECH