Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01538 ATGGCTGTTGCTGAGAATGTTGGGGCAAAAATCGGCTCTTCGAATCAGAGTTTGGATAGCGGTATAGTGTCTGCGGAAGCGAGTGAGGTCGAGAAAACGAGAAGCGATCAGAATCTGGACAACGGGCATCAAGAGAGAGTTCCCAGCTCTATGACAGTTCCTAACGGAAATTACAGCTATAAAACTCAGATGCACGCAAATGGGATGAACAAAGATGCGTATGGTATGAACGGGGTTATGAGTGGGGAGAATGGGGGTGAGAGTTTCAAGCGTGACATGAGGGATTTGGAAGAGCTTTTGTCAAAGCTGAACCCCATGGCTAAGGAATTTGTGCCCCCATCCCTAACCAATACTCATGGTTTTTTAGCTGGACCAAATGCTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAATTTTGGCAATACTAATGGACAAACTAACAATAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGTTGGCAGCACTCTTTCTGAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGGTTTGCATTCATTGAGTTTACAGATGAAGATGGAGCAAGGGCTGCCTTGAGCTTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATCGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAGCGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGCCATGGGTAGAAACTGTAAATATGTCTCTCATCAACAGATTTGATGAAGATTTGGTCTCTTCTCAGTCTTCTCACGCAATTTCAAACTCACCTCAACCTCCTGGTCTTCAATTCGATGGAGCCATACTCAAACTTGCTGTTGACTCTGCTGAGAGTGCAATTGCTGCCCTGAGCTGTAGTGGTGTGATATTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCTGTCCGCCCTCGTGCTCCCCGATCCTCTGTGCACTGA 1242 0.4461 MAVAENVGAKIGSSNQSLDSGIVSAEASEVEKTRSDQNLDNGHQERVPSSMTVPNGNYSYKTQMHANGMNKDAYGMNGVMSGENGGESFKRDMRDLEELLSKLNPMAKEFVPPSLTNTHGFLAGPNAGFGYTNNFMLPNNFGNTNGQTNNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALPWVETVNMSLINRFDEDLVSSQSSHAISNSPQPPGLQFDGAILKLAVDSAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSVH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01538 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Spst9g01538 413 MobiDBLite consensus disorder prediction 142 161 - -
Spst9g01538 413 MobiDBLite consensus disorder prediction 9 23 - -
Spst9g01538 413 Gene3D - 265 408 IPR012677 -
Spst9g01538 413 Gene3D - 141 256 IPR012677 -
Spst9g01538 413 SUPERFAMILY RNA-binding domain, RBD 179 324 IPR035979 GO:0003676
Spst9g01538 413 CDD RRM2_CID8_like 272 402 IPR034825 -
Spst9g01538 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 323 IPR000504 GO:0003723
Spst9g01538 413 SMART rrm1_1 277 346 IPR000504 GO:0003723
Spst9g01538 413 SMART rrm1_1 180 250 IPR000504 GO:0003723
Spst9g01538 413 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 98 407 - -
Spst9g01538 413 FunFam Polyadenylate-binding protein-interacting protein 11 144 256 - -
Spst9g01538 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 244 IPR000504 GO:0003723
Spst9g01538 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 324 IPR000504 GO:0003723
Spst9g01538 413 Pfam Ataxin-2 C-terminal region 100 114 IPR009818 -
Spst9g01538 413 MobiDBLite consensus disorder prediction 1 55 - -
Spst9g01538 413 CDD RRM1_CID8_like 177 256 IPR034823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01538 Spst-Chr9 15621356 15627256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01538 178 323 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 2.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01538 - - gmx:100787572 633.639