Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01530 ATGGGTGAGTTTGGCGTTCCCCACACGGGAAAAAGAAGAAGCAACAACAACAACAGTGGTAGCAGCGTTGTTGGGTTGGATGTTAAAGTGCAGAGCCCTGAAGCATTATTCCATAATAAGATGACGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCTGGTGATGGCGATGGTCCCACGGCTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGTGCTTCTGTTCTCGCTCCTGCTATTGATGGTGGCTGTGGTGCTGCTCCTGCACCTGTAAGAACTTTGCAGCCTTTTGACATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAACCCCTCAGCAGGTGGGATGGCGGCTTCGTTGGGGTTTCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCCATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACCTGATCTCCTCATCCCTACTTCACTCACACCCTCTTCTCGCTCCCCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCAAGTAGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCTAACCACAAGTACTGCGAGCGCCATATGCACAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAACACCAACACCACCACTCCCACTAGCATCAACAACAATACCCACCAACTCAAGAGGCCTCGCCATGAGTGTAATCCTTTTCCTCCTACAGCAGATGTTACTGTGGCTATGTCAAACCCCACATCTAGGAAAGAAGGATCTTCACCCCATTTTCTTGGCTCTTCTACCACTCAGCCATTCCTTGAATCTTCCCTCTCTCTTGCTAACTTTGGTATCAAAGCTGCAAATTTTGGCTCCGTGGCTTCTGTTTCTGCCAATAAGGAGCCCAGGGGTTTGGACTGGATGCTGAATGGAGATCCTATCTCCCTGGGTGCTTCTGACTCAGAATGGCATTCTCTGATGCATAACAAAGTTGGACTGAGCAGTGAGAGTTCCTGTAACACCAACCAGCCTCAGTATCTGAATTCATTTGCACTATACAACACTGGACTGGATCAACATAGTAGACGCCATCCTTTGTTCCTGAACCCTCTGGTTGTTCCCATGGAAAATCTCCAAACAGAGAAGCCAAGGGGTTTCATTGATGCTTGGTCCAACACAGAAACCGGTGATAACCATGCCAACACCAGTACCACCAACAAGAACTCTGCCTCATCAACTGGTAAATTGTCCCTTTCTTCTCTGGATCTATCAATGGGGGCTGGTGCTGTGAATGAAGATGTAGGTAATGTTAACATAGGGTTGGGTTTAATGGAGCCAAATGCAAACACACACACTGATACAAAAATCTCTCTCTCAAACTGGCTCAACCCAGCACCTTGGGTGGCTTCAACACTAGGGGGTCCTCTAGCTGAAGTTCTAAGGTCAAGCACAGTCACTGCCACCACCAATGAAGCAACCTCCAACACACCCTCACCAGCCACTACACACGTTGAATCGAACAGTCCACTGGGAACAATGGTGTCATCTCCAACTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAACTGTTGTATCATCAAGGGCCAACTCTGAGATGCCCTTGCTCAGGTTTCAACCAATCCACATATGTGACTAG 1770 0.478 MGEFGVPHTGKRRSNNNNSGSSVVGLDVKVQSPEALFHNKMTMMAHHNHHHRPLSSPFDNDSCAGDGDGPTAYMSFTNHINLVSGASVLAPAIDGGCGAAPAPVRTLQPFDISPYTSPTTTSSTFNPSAGGMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPPDLLIPTSLTPSSRSPCMDGGFNLRLASSTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTNTNTTTPTSINNNTHQLKRPRHECNPFPPTADVTVAMSNPTSRKEGSSPHFLGSSTTQPFLESSLSLANFGIKAANFGSVASVSANKEPRGLDWMLNGDPISLGASDSEWHSLMHNKVGLSSESSCNTNQPQYLNSFALYNTGLDQHSRRHPLFLNPLVVPMENLQTEKPRGFIDAWSNTETGDNHANTSTTNKNSASSTGKLSLSSLDLSMGAGAVNEDVGNVNIGLGLMEPNANTHTDTKISLSNWLNPAPWVASTLGGPLAEVLRSSTVTATTNEATSNTPSPATTHVESNSPLGTMVSSPTGVLQKTLVSLSDSSSNSSPTVVSSRANSEMPLLRFQPIHICD 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01530 589 MobiDBLite consensus disorder prediction 420 444 - -
Spst9g01530 589 ProSiteProfiles WRC domain profile. 196 240 IPR014977 -
Spst9g01530 589 Pfam QLQ 139 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g01530 589 PANTHER GROWTH-REGULATING FACTOR 5 120 447 IPR031137 GO:0005634|GO:0006351|GO:0032502
Spst9g01530 589 Pfam WRC 197 239 IPR014977 -
Spst9g01530 589 MobiDBLite consensus disorder prediction 228 262 - -
Spst9g01530 589 MobiDBLite consensus disorder prediction 10 24 - -
Spst9g01530 589 ProSiteProfiles QLQ domain profile. 139 174 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g01530 589 MobiDBLite consensus disorder prediction 237 257 - -
Spst9g01530 589 SMART QLQ_2 138 174 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst9g01530 589 MobiDBLite consensus disorder prediction 1 24 - -
Spst9g01530 589 MobiDBLite consensus disorder prediction 516 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01530 Spst-Chr9 15474120 15478487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01530 408 563 GRF Transcription Factor Family AT5G53660 34.118 1.96e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst9g01530 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01530 - - gmx:100803096 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01530 9 15474120 15478487 Spst9g01530 9 15474120 15478487 ECH