Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01499 ATGGCGAACGAACTATTAGCTCGTGCCTCACTTCCCCCAACATCGGAGTTACTTTCTCGGACCATATTTGCTGTATATGACGCTGTCAAAGCAGCCAATGAAGTTGTCATTCACAAGGAAAATTTCAAGAGATTCTCTATTCACCTGGAGAATGTTTCGGTTATATTGAAGTCTTTGTCGAAGGAAGACATAAACAATGCCGGGAGCTTGCAAAAGACTATGGCTGGTCTCAACCGAGAGGTTGAAGTTGCTAAGCAGCTTTCTATTGAGTGCAACATCAGAAGTAAGGTTTATCTTTTAATCAATTCAAGAAAGATCATTACACACTTGAATTGTTGTACCAAGGATATAGGCCGCGCGATAAGCCTTATTATCCTCTCGGTCTCTTTAGACGTTAACTCTGGTTTAAATAAAAGGGTAAGTGAGTTGTGCCAGAAAATGTTAGATGCTGAGTATCAAACAGCTGCAACAGATGAGGAGATTTTAAACAAAGTTGAGATAGCAATACAAGAGGGAAATGTTGATCGGTCGTATGCGAATCAGTTGCTAACTGGCATTGCACATGCCATTGGGGTCCCCATGGAGCATGGTGTTTTGAAGAGAGAATTTGAAGATCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATGGACGGCGCAGAAGCTCTACACATGGAACAGATTGTTGCGGTGCTTGGAAAAGCAGATTTTATATCTTCAGCACAAGAGAAGGAAACTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGAGACCGTTGACAGCTCTACATTCTTTTCACTGCCCAATCTCTCATGAAATTATGGTGGACCCTGTGGAGACTTCCTCTGGGAAGACATTTGAGAGAAGTGCAATAGAGAAATGGTTTGCTGAAGGGAACAATCTCTGTCCTATGACCAGGTTGCCTCTGGATACTAAAATCCTAAGGCCAAATAAAACTCTTAGAATGTCTATTCAAGAATGGAAGGATAGGAACACTATGATTACCATTTCTACCATCAAATCCGAACTTGAAACAAATGATGAAGAGGGAGTGGTTCAATCCTTAGACAAATTATATGACCTATGCGTAGAAAGAGAGGTACACCGAGAATGGTTAAAAATGGAGAATTGCATAACTGTTCTTATTGGACTTCTTAGTTATAAAAATCGTGAAATAAGGAGGCGTGTCCTACTCATTCTGTCTATGCTTGCAATGGATAATGAAGAGAACAAGGAAGATATTGTTGAAGTGGATAATGCACTTGGATTGATTGTTCGCTCACTTTCACGTCAAGTTGAGGAGCGCAAGTTGGCATTGGAGTTGCTGTTGGATTTATCTAAAAGTAAAATGGTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGCTGGTAACAATGTTAAATAGTGATGATGTTGAAGCAGCCAAAAAAGCACATGAGCTGCTGGAGAATCTCTCTTTCCTTGATCAGAATGTTGTAGAGATGGCAAAGACAAATTATCTTAAGCCTTTACTACAGAAACTTTGTACAGGACCAGAAAATATGAAAAGAGTCATGACTGAAACTTTGTCAGAAATTTCATTAACGGACCAAAATAAATTGTCCTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTACTCTTAAATGATGATGTGGAAATCAAGAAAGTGTCTGCCAAAGCTCTGCTACAGCTCTCAAACTTGCCAGAGAATGGCCTGCAGATGATTAAGGAAGGTGTTGCTCAACCACTGTTGGAACTACTATACTGTCACTGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTACCACGATAATGCATCTTGCCAAGTCAACAACTCACCAACAAGCTGAAGCAGATCAGATTTCATTCTTAGATTCTGAGGAAGACATATACAAATTCTTTTCTCTAATTTCTTTGACGGCACCTGAGATACAAAACAGGATTCTCCAAGCTTTCCAGGCATTGTGTCAATCTTTCTATGGCTTCCGCATCAGAAAGAGGTTGAGACAGATATCAGCAGCTAAATTATTGATAAACTTATTGGAGATTAATACTCAAAAAAGGGTCGATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGATGATCATGGCAACATCTCATCACATATAACTGAAAGTTTCATTAAAGTTTTGCTTAACATCATTAATGTTTCTGATGACGCAGAAGAGATAATCACTACTATGGGTATCATCGGTAAACTACCACAGGAGTCTCAAATGACCCAGTGGCTTCTAGATTCTGGGGTACTTAAAACTATTTTGACTTGTCTTACAGATCAACATAAGCATGCCTCACACAAAATCGTAGAGAATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCAGCAAATCTGGAGTGGCAGAAGAGTGTGGCTTTAGAAGGCCTAATCCCAGTGCTGGTGCAATTACTGCTTTCTGGATCACCCTTTACAAAACAAAATGCAGCTATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCGCTTGAGCGAGCCGATAAAGAAGCCGGGTATTTTCAAATGCTGCTTTGGAGGCCAGGAAACTGGTTGTCCAGCACACTTGGGCACCTGCTCAGTCGAGTCTTCATTCTGCATTTTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTCCTGAGCCAAATGTTGCAACCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATAGTGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCTATTGCACAAATGATACAATTACTGAATGTTCAGGCTCCCAGGTTGCAGGAAAAAATTCTAACAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTACAAAATTGTGGCTACAATGCCCTTGGTAGCCATAACTCAGGGGAAAGATAGCCGTTTGAAAAGTCTTGCTGCCAGAGGCCTTGCTCAATTGGGTGTACTTGATAAACAATCTATATGTAGTCCTGTTTTGCAGAGTCATTGTTGTGAAGAAAGATTTTCAGGCGAAGATGTGTCTGCACAGAACCAAGTGAAGGCGTCTGTTCAACGAAAAATACGGCAAAGTATTGCAGAAGAGTATCCAGGCCTTGAACCTGTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGTCAGAACCATCTCAACCTGGTTCTTGTGAATAACGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCTACCTTGCGACTTCTACATCAATATCCAAATATAATGAAGAAGTTACAAGTTGACCGTGGTGCAATTAGATTTGTCTTGGCGGGTGCAAACATAATGTGTCCCGGTCTTACATCTCCTGGGGGTGTCTTGGATGAGGATGTAGGAGCAGAATGTCCTGTGGCAATCATGGCTGAAGGAAAACAACATGCTCTTGCGATTGGCTTTACAAAAATGTCAGCAAAAGACATAAAAGCAATCAACAAGGGAATTGGGGTTGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGCGACTTGATTAA 3582 0.4076 MANELLARASLPPTSELLSRTIFAVYDAVKAANEVVIHKENFKRFSIHLENVSVILKSLSKEDINNAGSLQKTMAGLNREVEVAKQLSIECNIRSKVYLLINSRKIITHLNCCTKDIGRAISLIILSVSLDVNSGLNKRVSELCQKMLDAEYQTAATDEEILNKVEIAIQEGNVDRSYANQLLTGIAHAIGVPMEHGVLKREFEDLKNEMENAKSRMDGAEALHMEQIVAVLGKADFISSAQEKETKYFEKRNSLGERPLTALHSFHCPISHEIMVDPVETSSGKTFERSAIEKWFAEGNNLCPMTRLPLDTKILRPNKTLRMSIQEWKDRNTMITISTIKSELETNDEEGVVQSLDKLYDLCVEREVHREWLKMENCITVLIGLLSYKNREIRRRVLLILSMLAMDNEENKEDIVEVDNALGLIVRSLSRQVEERKLALELLLDLSKSKMVCSLIGNIQGSILLLVTMLNSDDVEAAKKAHELLENLSFLDQNVVEMAKTNYLKPLLQKLCTGPENMKRVMTETLSEISLTDQNKLSLVKDGALQPLLQLLLNDDVEIKKVSAKALLQLSNLPENGLQMIKEGVAQPLLELLYCHCLQSPTLLEQVVTTIMHLAKSTTHQQAEADQISFLDSEEDIYKFFSLISLTAPEIQNRILQAFQALCQSFYGFRIRKRLRQISAAKLLINLLEINTQKRVDALKLFYCLTEDDDHGNISSHITESFIKVLLNIINVSDDAEEIITTMGIIGKLPQESQMTQWLLDSGVLKTILTCLTDQHKHASHKIVENSVQALCRFTVSANLEWQKSVALEGLIPVLVQLLLSGSPFTKQNAAISIKQFSESSYRLSEPIKKPGIFKCCFGGQETGCPAHLGTCSVESSFCILQANALEPLVRLLPEPNVATCEASLDAILTLVDSEAPQSGSKVLANSNAIAQMIQLLNVQAPRLQEKILTALERIFQLDEVRNKYKIVATMPLVAITQGKDSRLKSLAARGLAQLGVLDKQSICSPVLQSHCCEERFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEDVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMERLD 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01499 1193 Gene3D - 1018 1192 - -
Spst9g01499 1193 CDD RING-Ubox_WDSUB1-like 265 318 - -
Spst9g01499 1193 Pfam Armadillo/beta-catenin-like repeat 533 570 IPR000225 GO:0005515
Spst9g01499 1193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 337 IPR013083 -
Spst9g01499 1193 SMART arm_5 491 531 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 752 796 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 873 913 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 573 616 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 408 448 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 917 957 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 532 572 IPR000225 GO:0005515
Spst9g01499 1193 SMART arm_5 799 839 IPR000225 GO:0005515
Spst9g01499 1193 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Spst9g01499 1193 SUPERFAMILY RING/U-box 250 334 - -
Spst9g01499 1193 Gene3D - 669 855 IPR011989 -
Spst9g01499 1193 CDD MCT1_N 1017 1091 - -
Spst9g01499 1193 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Spst9g01499 1193 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Spst9g01499 1193 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1002 - -
Spst9g01499 1193 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Spst9g01499 1193 Coils Coil 196 223 - -
Spst9g01499 1193 Pfam Pre-PUA-like domain 1020 1100 IPR041366 -
Spst9g01499 1193 CDD PUA_MCTS-1-like 1091 1187 - -
Spst9g01499 1193 SUPERFAMILY ARM repeat 765 1008 IPR016024 -
Spst9g01499 1193 Gene3D - 338 665 IPR011989 -
Spst9g01499 1193 ProSiteProfiles PUA domain profile. 1103 1183 - -
Spst9g01499 1193 Gene3D - 865 971 IPR011989 -
Spst9g01499 1193 SUPERFAMILY PUA domain-like 1103 1189 IPR015947 -
Spst9g01499 1193 Pfam PUA domain 1105 1182 IPR002478 GO:0003723
Spst9g01499 1193 SUPERFAMILY ARM repeat 339 490 IPR016024 -
Spst9g01499 1193 SMART pua_5 1104 1183 IPR002478 GO:0003723
Spst9g01499 1193 FunFam Malignant T-cell-amplified sequence 1 1013 1192 - -
Spst9g01499 1193 SUPERFAMILY ARM repeat 504 855 IPR016024 -
Spst9g01499 1193 NCBIfam uncharacterized domain 2 1074 1184 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01499 Spst-Chr9 15147493 15157137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01499 265 995 U-box Gene Family AT1G20780 26.369 1.64e-52 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01499 - - gmx:100818273 1567.36