Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01494 ATGGGTAGCTTCAGCGAAGACGATGAATGTCATTTTTTCGATGCTCAAGAGGATGTTGTATCTGTTGCGGATGATGAAGGGCTATCCAATGCTTTTGAGTATGGAGTGTGGATTCGGAGTCCAGGGAGTGTCAGAGAGCGTAGGGGCAGGTTTATGAAGAGTATCGGACTGAGTAGTGTAGATTTGATTGCCCTAGAAAGTGAACGCTCAGTAGATGTGGGTAGTGTTCAGTGTGAAGAGGTAATGGATAGAGTTAAAGTTACTAGTGGGGCTGTGACCGGAAATTGTGTTGTAGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTGGCAAAGGGAGAATTCTCCAGAGGAGTTTGGTTTAGCGGATAACTCGCCGTGTAGAGATCGGAATTTGGAGGGTAATGTGGATCAGGAGGGACTACAGTGTAGGGAGATGTGTGATGGAAGAGATCTGGATTCAGATCGGTTGGTGGTTGTCCAAGAACCTAATGATTCAGAGAATGCCTTTAGGGAAACGGATGCCAATGCTTCTGCTCGGAGAACAAGCAGGGTTAGAAAGGGTTGGTTCAGGAGATTGCGGTCGATAACATGCATGGTTAATAGGCATGAGGAAGGTGGTTTTGAAAGAGGAGAAGGCCTTGGTGAAATGCCAGGGTGTAGGCTTCCGAAAGTTAAGGTTCGTCAGCTGAAGAAGCCCACGAAGGAACTTTCAGCTCTTTACATGAGGCAAGATATCCAAGCACATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGATGATAGATGTAACGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTTACCGTGAATAATCTATCTGAATTGACACCACTATTTATGGATAAAGAAAAATTAAGCAAACTGAGGAGCCTGAAAAAAACTTCAGATTCTGCTTGCGTAGTTTTTCCTCCTAAGATCTTCCGGTTGTTAGAGAAACCATTGAATGAGTTTCGTGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATCATGACACTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACGAGCATACAATTCAATCCCGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGGCTATTCCTGAATGTCATGTTGTTGATTGGATTGATATCAAAGATATAGTGACTGCAGTATGCTACCGGCCTGATGGGCAGGGAGGGATTATTGGCTCTTTGGCTGGCAATTGTCGGTTTTACAATATATCAGAGAATCGCTTGCAGTTAGATTCCCAACTATGCTTGATTGGTAAAAAGAAACTTCCTGGCAGAGGGATTACTGGGTTTCAGTTTGTTCCGCATGACTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGCCTCAATGTGATTGGCAAGTACAAAAGCCTTAACGCAGGGAGCCCAATGTGTGCATCGTTTACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCCAACGTATACCTCTGGAATGTTAGTCAGGAAGAGTCTAATTCTGCGAAAGCTAAGAAGATTACATCTTGTGAGCGGTTTTTCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAGAAATGTTGAAAATGAACATCGATTGGATGTGTTGGATAAAAGATCATCTCAAGTTATACAACTTAATACACCTGCTTCCTTCTCTCTGAATCAAGAGTTTATTTTAGAGTCTTTTCCAAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGTTCCAAGGCTAAAACATCAGTGATGCACAAATCCGAATACAAGTTCTTGAAGTCTTCTTGCAAGAGTACTTCCTCTGCTCACGTGTGGGGTATGGTCATTGTCACTGGTGGCTGGGATGGAAGGATAAAATCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2109 0.4286 MGSFSEDDECHFFDAQEDVVSVADDEGLSNAFEYGVWIRSPGSVRERRGRFMKSIGLSSVDLIALESERSVDVGSVQCEEVMDRVKVTSGAVTGNCVVEEEFCSSRTSMSCWQRENSPEEFGLADNSPCRDRNLEGNVDQEGLQCREMCDGRDLDSDRLVVVQEPNDSENAFRETDANASARRTSRVRKGWFRRLRSITCMVNRHEEGGFERGEGLGEMPGCRLPKVKVRQLKKPTKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEDDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKLSKLRSLKKTSDSACVVFPPKIFRLLEKPLNEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNHDTCLKVFSHSNYVTSIQFNPVDDNYFISGSIDGKVRIWAIPECHVVDWIDIKDIVTAVCYRPDGQGGIIGSLAGNCRFYNISENRLQLDSQLCLIGKKKLPGRGITGFQFVPHDSNKVMVSCADSQVRILDGLNVIGKYKSLNAGSPMCASFTSDGKHILSACEDSNVYLWNVSQEESNSAKAKKITSCERFFSNASVAVPWHGLKSRNVENEHRLDVLDKRSSQVIQLNTPASFSLNQEFILESFPKGSATWPEEKLPVSSSKAKTSVMHKSEYKFLKSSCKSTSSAHVWGMVIVTGGWDGRIKSFHNYGLPIPV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 385 - -
Spst9g01494 702 Pfam WD domain, G-beta repeat 347 382 IPR001680 GO:0005515
Spst9g01494 702 Pfam WD domain, G-beta repeat 388 424 IPR001680 GO:0005515
Spst9g01494 702 Pfam WD domain, G-beta repeat 249 279 IPR001680 GO:0005515
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 281 - -
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 424 - -
Spst9g01494 702 Gene3D - 228 344 IPR015943 GO:0005515
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 567 IPR001680 GO:0005515
Spst9g01494 702 Gene3D - 482 695 IPR015943 GO:0005515
Spst9g01494 702 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Spst9g01494 702 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Spst9g01494 702 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Spst9g01494 702 SMART WD40_4 386 425 IPR001680 GO:0005515
Spst9g01494 702 SMART WD40_4 241 280 IPR001680 GO:0005515
Spst9g01494 702 SMART WD40_4 518 558 IPR001680 GO:0005515
Spst9g01494 702 SMART WD40_4 477 517 IPR001680 GO:0005515
Spst9g01494 702 SMART WD40_4 345 383 IPR001680 GO:0005515
Spst9g01494 702 SMART WD40_4 427 466 IPR001680 GO:0005515
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 392 IPR001680 GO:0005515
Spst9g01494 702 ProSitePatterns Trp-Asp (WD) repeats signature. 545 559 IPR019775 -
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 281 IPR001680 GO:0005515
Spst9g01494 702 PANTHER WD REPEAT DOMAIN 44 5 699 IPR040324 -
Spst9g01494 702 Gene3D - 345 481 IPR015943 GO:0005515
Spst9g01494 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 424 IPR001680 GO:0005515
Spst9g01494 702 SUPERFAMILY WD40 repeat-like 244 692 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01494 Spst-Chr9 15041494 15044535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01494 248 416 U-box Gene Family AT2G33340 24.365 2.16e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01494 - - gmx:100817209 1195.26