Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01488 ATGGCCCTGTCAAGTCCACACATGCAAAGATTCCTCTTGTGCAAGCTCCATAGCCGCTCCACCTCCAAGATCACGCAGAAGAACAGCTTCAGCACCGCTAGCAGGGGCCAGTGCTGCTCTGCCATAGCCATTGATGCTCCATCGTCTTTGACTGAGGTGCCCGGTGTAAGATGGGGATCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGACATCATTGTTCGACCCGATGGCCTTCAGGGCTTCTCTTTCGCGGCTGTCTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTTCTCAGTGCTAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTAAAAGGTGGATTACTATTAGTGGAGAAAGATTTCAAAGCCATTAAAGGCGCATTGCAGGACGCATTTCTGAAAGCAGACACAAGGTTATTACAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACAGCAACTGCCGTGTTCATTGGAGGTGATGAGCTTCTAATTTCACATATAGGTGACTCGTCTGTGGTTCTATGCAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGACCATATGGGAGCAACAAAACTTCTCTTGACGAAATTAGAAGAATCAGAGAAGCAGGAGGATGGGTAGCTCTTGGCTCAGATACAGAATTTATAGTCTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTAAGAAAACACGGAAACATTCAGCTAGCATGTGAATCACTTGCAGAAGCCGCTTTGGACCGACGGACACAGGATAATGTCAGCATTATAATTGCTGATTTAGGGCGCACAGATTGGCAGAATGTGCCACTGGAGCAACAAAATACTATATTTGAGCTTGTCCAAGCTATTGCTACCATTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGATTTCTTTATAG 990 0.4616 MALSSPHMQRFLLCKLHSRSTSKITQKNSFSTASRGQCCSAIAIDAPSSLTEVPGVRWGSIALQGLREEMEDDIIVRPDGLQGFSFAAVFDGHGGFSSVEFLSANYRDELYKECVEALKGGLLLVEKDFKAIKGALQDAFLKADTRLLQRLEMNGEEDESGATATAVFIGGDELLISHIGDSSVVLCRSGKAEVLTSPHRPYGSNKTSLDEIRRIREAGGWVALGSDTEFIVLASDGLWDYMSSSEAVSLVRDQLRKHGNIQLACESLAEAALDRRTQDNVSIIIADLGRTDWQNVPLEQQNTIFELVQAIATIGIVSIGIWFSSQISL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01488 329 SUPERFAMILY PP2C-like 48 289 IPR036457 -
Spst9g01488 329 PANTHER PROTEIN PHOSPHATASE 2C 37 222 IPR015655 GO:0004722|GO:0006470
Spst9g01488 329 ProSiteProfiles PPM-type phosphatase domain profile. 57 288 IPR001932 -
Spst9g01488 329 Gene3D - 56 295 IPR036457 -
Spst9g01488 329 SMART PP2C_SIG_2 56 288 IPR001932 -
Spst9g01488 329 Pfam Protein phosphatase 2C 224 281 IPR001932 -
Spst9g01488 329 Pfam Protein phosphatase 2C 59 223 IPR001932 -
Spst9g01488 329 CDD PP2Cc 64 288 IPR001932 -
Spst9g01488 329 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Spst9g01488 329 SMART PP2C_4 47 286 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01488 Spst-Chr9 14981273 14986044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01488 222 265 PP2C-type Phosphatase Gene Family AT4G27800 75.000 1.02e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01488 K04457 - vra:106776113 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01488 9 14981273 14986044 Spst9g01488 9 14981273 14986044 ECH
Spst9g01488 9 14981273 14986044 Spst8g02110 8 29474619 29481286 PCT