Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01481 ATGGACTTTGTCTCCGAACATGATTTTCCCAATCTTGAGATCATTCCTCATACCTTCAACTCATGCTTTTTCTCTGCTCAACTATACCCCACAGACAAAATGATGGAGGTTTCACTCTCACCGTTAGAGGGTTTTTCCGACCACGATTGGACACAGCAGTTGCCATATTCAAGCAAACAACTTTGCTTGGATGAGTTCCCAGATTTGGAAAACCTGGACCTCGATTTTAGCCTCCCACCTCTGGGTGAAGATTTGGAGGAGGTGGACCAGAAGCCCTTGAACTTTATTGTTGTTCCCGAAGGGGGTCGTTGCAACCGCGGGAAGGGTTTTGGGGATTCTTTATTGGCGATTGAAAATGGGTCTGCTATTTGCGTGAAGACAGAGGAGGGGGTAGAGAATATTGAGCAGATGGCAGTGCCTAGTGCTAGTAGTAGCAGTAAGAAGAAGAGGCCATGTGCTTTGGAATTTGAGGAGATAAAGAAGCATTTTGACGTTCCCATTAATGAAGCTGCGAAGCAAATGAATGTGGGGTTAACCATGTTGAAGAAAAGGTGCAGGGAGCTAAATATCATGAGGTGGCCCCATAGGAAACTCAAGAGCTTGCAATTACTCATCGACAATGTTAAGGAATTGGGTTTGGCAGACAAGGTTCCCATGTTGGAGAAGCATAAAAGGTTGTTGGAAAAATTGCCAGGACTGGATATAAGTGCAAAAGCCAAGAAGCTGAGGCAAGCTTGTTTCAAAGCTAATTACAAGAGAAGAAGGTGTATGGGTATGGCACTCCAAGCTTGA 792 0.4482 MDFVSEHDFPNLEIIPHTFNSCFFSAQLYPTDKMMEVSLSPLEGFSDHDWTQQLPYSSKQLCLDEFPDLENLDLDFSLPPLGEDLEEVDQKPLNFIVVPEGGRCNRGKGFGDSLLAIENGSAICVKTEEGVENIEQMAVPSASSSSKKKRPCALEFEEIKKHFDVPINEAAKQMNVGLTMLKKRCRELNIMRWPHRKLKSLQLLIDNVKELGLADKVPMLEKHKRLLEKLPGLDISAKAKKLRQACFKANYKRRRCMGMALQA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01481 263 Pfam RWP-RK domain 154 201 IPR003035 -
Spst9g01481 263 PANTHER PROTEIN RKD4 141 259 IPR044607 GO:0003700
Spst9g01481 263 ProSiteProfiles RWP-RK domain profile. 136 223 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01481 Spst-Chr9 14923381 14924711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01481 154 258 AtRKD Transcription Factor Family AT5G53040 61.905 1.47e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst9g01481 RWP-RK 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01481 - - pvu:PHAVU_009G051600g 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01481 9 14923381 14924711 Spst9g01481 9 14923381 14924711 ECH