Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01467 ATGGGGAAAGTGGAATATGATGTAATCTTGAATGATGCCATTATTGCAATATTCAAGCCAGGCCACGTGCACCGAAAATGGAGTTGTGAAATGTGGTGGAAAGGGGTTTTTGGTGAGTTGATGGACTTGGAAAGCGTCGAGTGCGTGTCATCCTCGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCATTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGCCCCACCGCCCTTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCACCTATTCACCAGTGTCACAACGGTCACACACTGTGTTCCACGTGTAAAACAAGGGTGCATAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCACTTGAACTACCTTGCAAGTACTTCTCCCTTGGGTGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTGTGTAACTATAGACCATATACTTGCCCTTATGCTGGATCGGAGTGTTCTGTTGTCGGGGATATTCCCTTCCTTGTTGCTCATCTAAGGGACGATCATAAAGTGGACATGCACACAGGTTGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCGTTCCAACTGGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGCGATGAGAATGAGGCTCGGAATTATAGCTACAGCCTAGAGGTTGGAGCCAATGGTAGGAAACTCATTTGGGAGGGTACACCACGGAGTGTTCGAGATAGCCACCGTAAAGTTAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACTGGAAGAATATGGAAAGAACAACAGAATTCGGATGCCGGTTTAGTTCCAATGGCTGATCTTGTTGCTCCAGTACAGGGGGTTTCAACCTTAAAGAAGGCATAG 1131 0.4607 MGKVEYDVILNDAIIAIFKPGHVHRKWSCEMWWKGVFGELMDLESVECVSSSDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGPTALAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCPEIFPYYSKLKHETVCNYRPYTCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGLVPMADLVAPVQGVSTLKKA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01467 376 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 79 349 - -
Spst9g01467 376 CDD RING-HC_SIAHs 100 138 - -
Spst9g01467 376 FunFam E3 ubiquitin-protein ligase SINAT5-like 211 343 - -
Spst9g01467 376 MobiDBLite consensus disorder prediction 54 71 - -
Spst9g01467 376 MobiDBLite consensus disorder prediction 72 87 - -
Spst9g01467 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 209 IPR013083 -
Spst9g01467 376 ProSiteProfiles Zinc finger RING-type profile. 102 138 IPR001841 -
Spst9g01467 376 CDD Sina 216 344 - -
Spst9g01467 376 Pfam Seven in absentia protein family 144 343 IPR018121 GO:0005737|GO:0006511|GO:0007275
Spst9g01467 376 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 210 343 IPR008974 GO:0005515
Spst9g01467 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 154 IPR013083 -
Spst9g01467 376 SUPERFAMILY RING/U-box 93 141 - -
Spst9g01467 376 MobiDBLite consensus disorder prediction 54 87 - -
Spst9g01467 376 FunFam E3 ubiquitin-protein ligase SINAT3 51 153 - -
Spst9g01467 376 FunFam E3 ubiquitin-protein ligase SINAT3 154 210 - -
Spst9g01467 376 SUPERFAMILY TRAF domain-like 155 347 - -
Spst9g01467 376 ProSiteProfiles Zinc finger SIAH-type profile. 155 215 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01467 Spst-Chr9 14811496 14817574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01467 70 350 C3H Transcription Factor Family AT2G41980 75.089 1.04e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01467 K04506 - gmx:100810573 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01467 9 14811496 14817574 Spst9g01467 9 14811496 14817574 ECH