Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01458 ATGATTATCAAACGTAACTTGAAATCTCAAATGCCGAATCTGAAACGGGTCAAACTCGGTGACTCGGTGGGCGAGGACGACGATTGCTCCTACGCTCGGAAGAAGAGGAAGACCAACGGTTACTACCCTTTGAACCTTCTTGGCGACGTGATTCCGGCGAGTTTTCACGGGCTTTTAGGCGCCGGCGTGTCGGAGAAGGGTTTTTCTGCGACGTGGTGCACGCAGGTATCGTGCAACGGAGTGGAATCGAATGCGAAAAATGACGTCGTGGTGGAAGCGAAGAAGAAGAGCGAGGTTCAGCGGCCACCTCTGGTTAGGACTTCGAGGGGGAGAGTTCAGGTTCTGCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAAGAGAGCAAGAGTAGTAGTGGCGTGCGAGATTGTGATTATGATGAAGAGTTTGAATGCAAGAAGGAGAAGCTCGGCTTCAGGGCGCCCAAAATTTGCAATAATCAAAAGAAAGGGAAAAACGAGGAGAAAACGGCGTCTAAGGCTCGTAAGTACTCCGCATTGTGCAAGACTTATGAGCGGAGCAAATGTTCGAGTTTGCCTGGTGGTGAGGCATTGGTCTTGAGGCATGGTGGGGTGGCCGTTGAAGAAGACGAGAGGGGAAGGTTTTCGGAGGTGGAAGGAGTTGGTTTGATGGGGTTGAAGGAGAATAACGGGGAGAGGAGAAATGGGTTATTTGGGCCAGAAGATTTTTATGCAGGTGACATAGTGTGGGCCAAAGCCGGGAGAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGACTCAGGCACCTGAGTTGGTTCTCAGGTCTTGTATAGCTGATGCAGCCTGTGTCATGTTTCTTGGGTACGCTGGGAATGAGAATCAAAGGGATTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTGTGGATTATGTGGACAGGCGTGATGTTTCTTGGTTTAGATTTCAGGGGCAGTCTGAGTTGAGTTTCTATAATCCTTCCGACTTCCAAATGGCAATCGAGGAGGCATTTTTGGCAGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAACACGGCAGCTAGTAACAATGGTTATGATGATTCTATTCTGAAAGCCTTTCATGAAGTCACTCATTCAAACCATTATGCAGGATATCGTTTTCTGAACCAGGATTTATTTGATAAGAAAGATACACGGCCCTGTGAAGCCTGTGGGTTGAGCCTTCCTTACAAGATATTAAAGAAAACGAGGGATTCAAGCCCCGGTGGGCAATTCCTATGTAGAACATGTGCTAGGTTAACAAAATCAAAGCATTATTGTGGCATATGCAAGAAGGTTTGGAATCATTCAGATAGTGGAAGTTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTACATGCTGAATGTGACAAAATTTCTAACCACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTGTCAGATTCAGAAAAACCACATCCAAAAGTCAAGTGGAACAAAAACAATGAGCAACTCGTGCTTCCAAATAGGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGGCAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATCAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCTTTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTATTGCTCAAGTTCCTACCAAACCTAAGAAACCTTCTCTGAAAGAAAGAAAGCAGAAGCTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACTACAGAACGCTGTGCTGTCTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATTATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCTTGGGTTTGTAAGGCCTGTGAAACGCCTCATATCAAGCGCGAGTGTTGTCTTTGTCCTGTGAAAGGTGGTGCTCTGAAGCCAACTGATGTTGACACGTTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCCTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGGTGGGATTTGTGTTATTTGCAAGCAAATTCATGGGTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGACCTCAAAAGGAGAAGACATGGAAATTGCATTGTTTGGAGAAAAATGGCCGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCCAATCCAGATACTGTTTTGATTATGCAAACTCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCGTCTAACAGAAGAAAACAAGACGACACTCCTGTTGATAACACTGAGCATGAACCATTTTCTGCAGCTAGGTGCCGAATCTTTCAAAGAATAAACCATACCAAAAAGAGAGCTGCAGATGAAGCCGTTTCTCATCAAGTTAGGGGTCACTATCATCATCCTTTAGATGCAATACAGAGTTTAAATACACCCAGAGTGGTACATGAACCCCAGGCATTTTCTTCTTTCAGGGAACGGCTTTACTACTTGCAGAGAACTGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCGCGTAGAAATATTCAGGAAGGAGAAATGGTCCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGATTGCTACCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTGATTAATCATTCATGTATGCCAAATTGCTATGCAAGGATCATGAGTGTCGGTGATGACGAGAGCCGGATTGTGCTCATTGCTAAGACCATCGTGTCTGCCGGTGACGAGTTAACGTATGACTACTTGTTTGATCCTGACGAGCCAGATGAATTCAAAGTCCCCTGCCTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3252 0.445 MIIKRNLKSQMPNLKRVKLGDSVGEDDDCSYARKKRKTNGYYPLNLLGDVIPASFHGLLGAGVSEKGFSATWCTQVSCNGVESNAKNDVVVEAKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGVRDCDYDEEFECKKEKLGFRAPKICNNQKKGKNEEKTASKARKYSALCKTYERSKCSSLPGGEALVLRHGGVAVEEDERGRFSEVEGVGLMGLKENNGERRNGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFVDYVDRRDVSWFRFQGQSELSFYNPSDFQMAIEEAFLAERGFTEKLIADINTAASNNGYDDSILKAFHEVTHSNHYAGYRFLNQDLFDKKDTRPCEACGLSLPYKILKKTRDSSPGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISNHLFKNLEGTDYYCPTCKAKFDFELSDSEKPHPKVKWNKNNEQLVLPNRVTVLCNGVEGIYFPSLHSVVCKCGFCGAEKQALSEWERHTGSKSRNWRTSIRVKDSMLPLEQWMLQLAEFHAIAQVPTKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPHIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKVGFVLFASKFMGRVHNVASVPLISMPCVHQGPVIEWRPQKEKTWKLHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDDTPVDNTEHEPFSAARCRIFQRINHTKKRAADEAVSHQVRGHYHHPLDAIQSLNTPRVVHEPQAFSSFRERLYYLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTIVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01458 1083 ProSiteProfiles Post-SET domain profile. 1067 1083 IPR003616 -
Spst9g01458 1083 SUPERFAMILY FYVE/PHD zinc finger 640 704 IPR011011 -
Spst9g01458 1083 Gene3D - 243 356 - -
Spst9g01458 1083 ProSiteProfiles Extended PHD (ePHD) domain profile. 693 818 IPR034732 -
Spst9g01458 1083 ProSiteProfiles Zinc finger PHD-type profile. 639 690 IPR019787 -
Spst9g01458 1083 ProSiteProfiles SET domain profile. 941 1058 IPR001214 GO:0005515
Spst9g01458 1083 MobiDBLite consensus disorder prediction 853 867 - -
Spst9g01458 1083 SMART PHD_3 641 688 IPR001965 -
Spst9g01458 1083 SMART PHD_3 447 499 IPR001965 -
Spst9g01458 1083 ProSiteProfiles Zinc finger PHD-type profile. 445 501 IPR019787 -
Spst9g01458 1083 SMART set_7 941 1064 IPR001214 GO:0005515
Spst9g01458 1083 ProSitePatterns Zinc finger PHD-type signature. 642 687 IPR019786 -
Spst9g01458 1083 Pfam PHD-zinc-finger like domain 695 746 - -
Spst9g01458 1083 PANTHER PHD FINGER PROTEINS 86 516 - -
Spst9g01458 1083 Pfam PHD-finger 654 688 - -
Spst9g01458 1083 CDD PHD_TCF19_like 448 498 - -
Spst9g01458 1083 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Spst9g01458 1083 FunFam Histone-lysine N-methyltransferase 629 690 - -
Spst9g01458 1083 SUPERFAMILY SET domain 931 1083 IPR046341 -
Spst9g01458 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 502 IPR013083 -
Spst9g01458 1083 Pfam SET domain 952 1057 IPR001214 GO:0005515
Spst9g01458 1083 SMART PostSET_3 1067 1083 IPR003616 -
Spst9g01458 1083 SUPERFAMILY FYVE/PHD zinc finger 445 502 IPR011011 -
Spst9g01458 1083 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1083 IPR025780 -
Spst9g01458 1083 Pfam PHD-finger 447 500 IPR019787 -
Spst9g01458 1083 MobiDBLite consensus disorder prediction 846 869 - -
Spst9g01458 1083 CDD PWWP_AtATX3-like 247 358 - -
Spst9g01458 1083 FunFam Histone-lysine N-methyltransferase 915 1083 - -
Spst9g01458 1083 CDD SET_SETD1-like 928 1079 - -
Spst9g01458 1083 Gene3D SET domain 842 1083 IPR046341 -
Spst9g01458 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 691 IPR013083 -
Spst9g01458 1083 SUPERFAMILY Tudor/PWWP/MBT 241 355 - -
Spst9g01458 1083 CDD PHD_ATX3_4_5_like 641 687 IPR042011 -
Spst9g01458 1083 Pfam PWWP domain 249 349 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01458 Spst-Chr9 14652958 14663393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01458 404 472 EF-hand Containing Proteins AT5G28340 50.725 2.31e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g01458 SET 4.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01458 - - gmx:100808761 1922.52