LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01455	ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCGGCGCACGAGGAGGTGGAGCGGTTGGAGCGGCTGATAGTAAAGGAGCTCCAGAATGAGCCTGGCACAAACAAGGAGCGTTTGTATCAGAGTCACCGGGTGCGAAATATGATTGATACCATCACCTCGACCACTGAAAAGCTTATTGGGATATATGAAGATAACGACAATGCTAGGAAGGACGAGATTGCTGCACTTGGAGGCCAAACTGCCTCTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTCAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGACGCCAATGATGATTATGAAATGGTCCTCAAAGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGACCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCAATAGAGTATTCTGCATATCTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAATGACCAGAAAGTACCGAGAATATATGGTGAATCTTTTGGAGTATCTATTGTACTTTTTCCAGCGGACTGAGCCCCTGCAAGATCTTGATCGAATTTTCTCAAAGGTAACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACGGGGATGGGAAAATGACAATCAGGAGAATGGACATGTACCTGCTGAACATGCTACTATTGATCTTGATTATTATAGTACTATTGAAGAGCTAATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCATTGGGGCTGAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCACAAAGCACACACCTCTTGAAAAATTGGACAGGAAGCATTTTGCTAAAGGGGCACGTAGTGTAGAAAAGAACGGGGTTGCAGTTCCACAAGAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCTAAAGTGGAAAAACTCTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCTTAACATATGAGGAAATGGAAGCAGAACGTGAGGAGGAAGAAACACAAGAGGACACTGAAAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTATAGTTATTGGGGCCGTCGAGCTTTCGAACGACACTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACCAAGAATTTCAACGAAATCACATCAATTGAGGAAGCAAAGGATCTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGCTGGGAAATGAACATGAATTGGAACTTCTGTTAAAGGTATGCAAGATAGATCATCGTCGTGCCATCATTGAAGCTGCAACACGACAGCGAGATGATGTTGTCTTCGACAAAGTGGAAGAGACAATCACCGTGACGATTTCACGCGACAAGAGGAAGTGCATTGATAAAGTGGAGAAAGGGCATGCAACTTTAGATGACATACTCACTGCAACGGCATGGAGGAGAATAAATGCTAAAAGAGTAACAAAATGCGAGGAAACTCATGCATGGGGATTAGAAAAGCGCTATTATAGGGAGAATATGAATGCCATTTCTTTTATTCTCGCTCAAAATGAAAGCAACAAAAAAAGAGGAAGGAAATTAAAACCTGATGGATAA	1833	0.4277	MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTITSTTEKLIGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYEMVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTNKIPRKMKMTRKYREYMVNLLEYLLYFFQRTEPLQDLDRIFSKVTTEFEENWAAGKVRGWENDNQENGHVPAEHATIDLDYYSTIEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGARSVEKNGVAVPQEDGNSKEIALMEAKVEKLCDLLEETIARTKDNVVKKQALTYEEMEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEELGNEHELELLLKVCKIDHRRAIIEAATRQRDDVVFDKVEETITVTISRDKRKCIDKVEKGHATLDDILTATAWRRINAKRVTKCEETHAWGLEKRYYRENMNAISFILAQNESNKKRGRKLKPDG	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01455	610	Pfam	Splicing factor SF3a60 binding domain	80	105	IPR021966	-
	Spst9g01455	610	Coils	Coil	352	379	-	-
	Spst9g01455	610	Pfam	Replication stress response SDE2 C-terminal	223	304	IPR025086	-
	Spst9g01455	610	MobiDBLite	consensus disorder prediction	361	382	-	-
	Spst9g01455	610	Pfam	Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9	127	176	IPR031774	-
	Spst9g01455	610	Pfam	SF3a60/Prp9 C-terminal	389	488	IPR024598	GO:0000398\|GO:0003723\|GO:0005681
	Spst9g01455	610	PANTHER	SPLICING FACTOR SF3A-RELATED	241	311	-	-
	Spst9g01455	610	MobiDBLite	consensus disorder prediction	362	381	-	-
	Spst9g01455	610	ProSiteProfiles	Zinc finger matrin-type profile.	413	444	IPR000690	GO:0003676\|GO:0005634\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01455	Spst-Chr9	14600972	14617254	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01455	1	480	C2H2 Transcription Factor Family	AT5G06160	73.181	0.0	716