Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01453 ATGAAAATCCCCAGTCCCATACTCACGCTATTCATCTTCTTGAGCCCTTCGCTAGCACTGGCAAACATAGAAACATGTTTAGACAGCGTTTGTCAGGGTGGTGAGCCACTAATCCGATTCCCCTTCCGCATAGAAGGAAAACACGCAGAATCATGCGGATATCCAGGCTTCATAGTCTCCTGCACCCAAAACGCCCAAACACTCCTCAACTTACCAAATTGGGGCCCACTTAAAATCCAATCTATAAACTACGCTGCGCAACAACTGTGGGTGAACGATCCCAAAAACTGCCTCCCTAACCGCCTCCTCTCTCTCAACCTCTCCGCCTCTCCCTTCCGCGCCGTTTACCACCAACAGTTCACCTTCTTCAACTGCTCCCTCAATTTGGAGTATCTCGTTAGTCGATACCGTCCCATAGCTTGTCTCAGTGATTCTCCCAAGTACGTCGTTTTCGCGACGCCTTCTCCGACCGCGGTTGGCCACTTGACTTCTGTGTGTAATTTGGTGGCCACGGTGAAGGTGCCCGTGCAGTCGCCGTTTTACGATCAAGTCATGTCGTCGGAACTTGTCGAGGATTTGCGACTGTCATGGGATTCGCCGGCGTGTGGCAGGTGCGAGTCCCACGGTGGCCGGTGTGGCTTCAAGAGTAACGACACTTTTGAGCTTGACTGCTCCGGTGTCCCTTCGAAAGGGATTTCCCGTGGTGCCCGTTACGCCATAGCTGTATGCATAGGGATCCCAGCTATGTTATGCTCCTTTGGAGTATTGAGTTGCATATGCGGCTGGCTCAAAAACGGGAACCACGATCGACATTGGGCTCACGAAACGGTGGCAGATTTTGAGGCTCTTGTGGGCTCATGGCCCACCACGGTGTCGGGCCTGGATAGGCCCACTATCGAATCCTACCCAAAAATAGTTATAGGTGAGAACAGACGTTTACCCAAGAAGGGTGAGAAAACCTGCCCAATTTGTCTCTCAGAGTACATGCCAAAAGAGACAGTGAAAAGCATTCCTGAATGTGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCTTGTCCAATTTGCCGTACTTCTCCCCGAAAGTTACCACAACCGCGTGCTCGATCATCACCATAG 1137 0.5136 MKIPSPILTLFIFLSPSLALANIETCLDSVCQGGEPLIRFPFRIEGKHAESCGYPGFIVSCTQNAQTLLNLPNWGPLKIQSINYAAQQLWVNDPKNCLPNRLLSLNLSASPFRAVYHQQFTFFNCSLNLEYLVSRYRPIACLSDSPKYVVFATPSPTAVGHLTSVCNLVATVKVPVQSPFYDQVMSSELVEDLRLSWDSPACGRCESHGGRCGFKSNDTFELDCSGVPSKGISRGARYAIAVCIGIPAMLCSFGVLSCICGWLKNGNHDRHWAHETVADFEALVGSWPTTVSGLDRPTIESYPKIVIGENRRLPKKGEKTCPICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKLPQPRARSSP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01453 378 CDD RING-H2_EL5-like 321 363 - -
Spst9g01453 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 366 IPR046948 -
Spst9g01453 378 SMART ring_2 321 362 IPR001841 -
Spst9g01453 378 Pfam Wall-associated receptor kinase C-terminal 162 224 IPR032872 -
Spst9g01453 378 SUPERFAMILY RING/U-box 320 367 - -
Spst9g01453 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 367 IPR013083 -
Spst9g01453 378 Pfam Ring finger domain 320 363 IPR001841 -
Spst9g01453 378 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Spst9g01453 378 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01453 Spst-Chr9 14574088 14577098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01453 24 366 C3H Transcription Factor Family AT2G46495 37.500 1.84e-67 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01453 - - vun:114163980 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01453 9 14574088 14577098 Spst9g01453 9 14574088 14577098 ECH