Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01443 ATGAGAGTAGGCTGTGAGATTTCTAGGTTCATGAATTTTCAGCAAGATAAGTTTGTTAGATTTCGGGATTGGAATTCAGAGAAGGATTCTGAGAGCAGCTCTCCTGCAATTCATGTAGAACGCCCGGGCAGAATCAGGAATACACTATATTCAGTTTCCGAGAAGTTTCAAAGGGGTTTGGAATCTAGTTCAGAGGGGGTGAAGAGATTTAGAAAATCATTCAAATCTCTTCCTTATAATAGAGTTCTGTCCAGAAGTTTTAGTTCTAGGAAGAAAATCCTTGATCCACAGGGCCCTTTTCTTCAAAAGTGGAATAAGATATTTGTATTATCATGTCTTATTGCCGTTTCACTTGATCCTTTGTTCTTCTATGTTCCTGTGATTGATGATAACAATAAATGTCTTTCTCTAGACAGAAAAATGGAAATTACAGCAACAGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTAATAGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGCAATTCTAATTATCATTCCAAAGTTGAGAGGCTCTGAATCACTGAATACAAAGACCTTGCTAAAATTTATTGTCTTCTTCCAATATATCCCGCGATTTTTGCGACTAATTCCATTATATAAAGAAGTTACTAGGACCTCTGGCATTCTCACCGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTAGCCAGTCATAAAGAGAAACCACATGCTGGCAAGATGCCTGTCGAGGAAACAGCACATGATCAAAATACAACACTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTAAGTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGTCAACGACTACCAGATTGGAGGAAATGAGAGTGAAAAGGAGAGATGCTGAACAGTGGATGTCTCATCGATTACTTCCTGACAGCCTGAGAGACAGAATCAGACGTCATGAGCAGTACAAATGGCAAGAAACAAGAGGTGTTGATGAAGACAATTTGATCCGAGATCTTCCAAAGGATTTGAGAAGAGATATTAAGCGGCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACAGACTGAAGCCAGTGCTATACACAGAAGAAAGCTGCATTGCCCGGGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGCGGTAAGCTATTGACTGAGACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAGTACCTCAAGGCTGGTGACTTCTGTGGAGAGGAACTTCTCACATGGGCATTAGATCCTCACTCCTCAGCCAACCTTCCCATATCAACAAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTTGCTCTAAAAGCCGATGACTTAAAGTTTGTTGCATCACAGTTCCGGCGCCTTCATAGTAAGCAACTTCGTCACACTTTCAGGTTTTATTCGCAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCATGGAGGCGCTATAGTAAAAAGAAGTTGGAAGAGTCTCTCAGGGAAGAAGAGAATAGGTTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCAAGCCTAGGTGCCACCATATATGCTTCAAGATTTGCAGCTAATGCACTCAGACTCTTACGTAGAAATGGCACAAGAAAAACCAGAGTGCCAGAGAGAATATCACCCATGCTGCTGCAGAAGCCTGCTGAACCTGATTTTACCTCTGAAGAACAATAG 2049 0.41 MRVGCEISRFMNFQQDKFVRFRDWNSEKDSESSSPAIHVERPGRIRNTLYSVSEKFQRGLESSSEGVKRFRKSFKSLPYNRVLSRSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNNKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLRGSESLNTKTLLKFIVFFQYIPRFLRLIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHKEKPHAGKMPVEETAHDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRDRIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESCIAREGDPVDEMLFIMRGKLLTETTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSANLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNGTRKTRVPERISPMLLQKPAEPDFTSEEQ 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01443 682 SUPERFAMILY cAMP-binding domain-like 382 575 IPR018490 -
Spst9g01443 682 Gene3D Helix hairpin bin 380 444 - -
Spst9g01443 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 299 677 - -
Spst9g01443 682 Pfam Ion transport protein 104 280 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst9g01443 682 Pfam Ion transport protein 324 382 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst9g01443 682 Coils Coil 605 625 - -
Spst9g01443 682 FunFam Cyclic nucleotide-gated ion channel 1 451 569 - -
Spst9g01443 682 ProSiteProfiles cAMP/cGMP binding motif profile. 453 536 IPR000595 -
Spst9g01443 682 FunFam Cyclic nucleotide-gated ion channel 1 380 444 - -
Spst9g01443 682 SUPERFAMILY Voltage-gated potassium channels 95 379 - -
Spst9g01443 682 Gene3D - 107 379 - -
Spst9g01443 682 CDD CAP_ED 453 584 IPR000595 -
Spst9g01443 682 Gene3D Jelly Rolls 451 571 IPR014710 -
Spst9g01443 682 SMART cnmp_10 453 584 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01443 Spst-Chr9 14447436 14454136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01443 11 681 Ion Channels AT5G53130 74.860 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01443 K05391 - gmx:100815774 1211.44