Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01428 ATGGACGACGGCTTATGTGATATTTTCCACGACAAAGAATTTGGGAGCGACCACTTTGGTGGGGACGACCTCTTCGCCATTTTGGAGAGCCTGGAATCGGACTTCACCGATTTCCCTCCCATTAACGAAGAAGCTGTTGCTATCTCCAAAGACAACGAGGATGTCTCAAGATTGGTGTCCCAAAAGTCTACCTCGTCAAGTGCTCCACAAGATTATTCCGAAACTGAGCTTGAAACTTTACCAAAAACCAAGAGACAAAAGCTTACTCCTACCACGCCAGAGGAAGCAAACCCAGATGGACAACAAAGGATGTCTCACATCACCGTTGAACGCAACAGGAGAAAGCAAATGAATGAACACTTGTCCGTTTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGGGTGGTTGACTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAGCAAAGAAAAGTTTACAGCGAAGTCTTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCACCACTGAGTCCTCGGAAACCACCTCTGAGCCCGAGACTAAACTTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGTTGCAGCAAGGCTACAACAACATGATTTCACCAACCATGTCCAACTCTCTCGACCCTTCTCCCACTTCTTCCGCCAATTCCTCTATCAACGACAACATCAACGAGCTTGTTGCTAACTCCAAATCCGCCACTGCTGATGTGGAGGTCAAGTTTTCAGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCCGGACAGGCTCTGAAGATAATCACAGCACTTGAAGATCTTGCGCTCGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGTCAACTGAGTGCGGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 1017 0.4739 MDDGLCDIFHDKEFGSDHFGGDDLFAILESLESDFTDFPPINEEAVAISKDNEDVSRLVSQKSTSSSAPQDYSETELETLPKTKRQKLTPTTPEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01428 338 MobiDBLite consensus disorder prediction 210 241 - -
Spst9g01428 338 FunFam Transcription factor SPEECHLESS 93 167 - -
Spst9g01428 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Spst9g01428 338 Coils Coil 145 165 - -
Spst9g01428 338 MobiDBLite consensus disorder prediction 53 104 - -
Spst9g01428 338 SMART finulus 107 158 IPR011598 GO:0046983
Spst9g01428 338 MobiDBLite consensus disorder prediction 84 104 - -
Spst9g01428 338 Gene3D - 93 166 IPR036638 GO:0046983
Spst9g01428 338 MobiDBLite consensus disorder prediction 58 76 - -
Spst9g01428 338 CDD bHLH_AtFAMA_like 104 175 - -
Spst9g01428 338 MobiDBLite consensus disorder prediction 174 241 - -
Spst9g01428 338 PANTHER TRANSCRIPTION FACTOR FAMA 4 337 IPR044283 GO:0003700|GO:0010052
Spst9g01428 338 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Spst9g01428 338 MobiDBLite consensus disorder prediction 180 209 - -
Spst9g01428 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01428 Spst-Chr9 14243617 14246596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01428 1 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.066 4.62e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g01428 HLH 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01428 K20558 - gmx:100777437 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01428 9 14243617 14246596 Spst9g01428 9 14243617 14246596 ECH