Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01421 ATGGCCAAAAAGCTGCCCCTTTTGTACATTTGTTCAGCGGCCTTGGTGATGGAAGCAGTGCTGGTTAGTGTTGTGGCTGAACCAGTGGAAGATAAGCAAGCTCTGCTTGATTTCTTTTACAACATGAATCACTCTCCTCATGTCAATTGGGATAAGAACACTTCTGTTTGCCAAAGCTGGAGAGGAGTGACTTGCAACTCTGACAGGTCTCGAGTCATAGCCCTTAGATTACCAGGAGCTGGTTTGAGTGGTCCAATCCCACCCAACACTCTCAGTCGCCTCTCAGCACTTGAGATTGTTAGTCTTAGATCAAATGGTATATCAGGCCCTTTCCCTGATGGTTTCTCTGAGCTGAAAAACTTGACCAGCCTCTATCTACAATCTAACGAGTTTTCTGGGCCACTGCCATTGGATTTTTCAGTTTGGAATAATCTTAGTGTTGTCAATTTATCCAACAATTATTTTAATGGGAGCATTCCCTTTTCAATTTCCAATCTGACTTATCTCGCTTCATTAGTCCTTGCCAACAACTCCTTTACGGGTGAGATTCCTGATCTCAATAATCCTAGCCTGCAGGAGCTGGATTTAGCCAACAATAACCTTACTGGGGTTGTGCCTAAATCTCTTCTTAGATTTCCTAGTTCAGCCTTTGCTGGTAACAATCTTACATCAGCAGCAGCACTTCCTCCAGCCTTTCCTGTGCAACCACCGGCTGCTCATCCAGCAGAAAAATCCAAAGGACTCAGTGAACCTGCATTGTTGGGTATCATCATCGGTGCTTCGGTGCTGGGGTTTGTGGTGATTGCAGGTTTCATGATTGTGTGCTGCTATCAGAATGCAGATGTGGATGTGCAACCAATGAAATCCCAGAAAAAACAAGCCTCTCTGAAAACAGAATCTTCTGGAAGTCAAGACAAAAACAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGATCTAGAGGACCTGTTGAGAGCGTCTGCTGAGATTCTCGGAAAGGGTACCTTTGGCATGACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTCAAGAGGTTGAAGGAGGTCACTGCTGGAAAACGAGATTTTGAACAGCAGATGGAGGTGGTGGGGAGAGTTAAGCACGACAATGTAGATACAGTGAAGGCATACTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTACTATCAACGAGGCAGCGTTTCTGCAATGTTACATGGCAAAGGAGGGGAAGGTAGAAGTCCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATTGGTGCAGCAAGAGGCATTGCTCACATCCACGCATACCATGGAGGGAAACTCGTTCACGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATACGGATGCATATCTGATATTGGCTTAGCAACACTGATGAGTCCAATACCCGTCCCAGCAATGAGAGCAACAGGATACCGTGCACCGGAAGTAACAGACACACGCAAAGCAACGCATGCATCTGATGTCTACAGTTTTGGGGTGCTACTACTTGAGCTTCTGACTGGGAAATCGCCCATAAACAGTACAGAAGGTGAGCAGGTTGTCCACTTGGTTAGATGGGTGAATTCTGTTGTAAGAGAGGAGTGGACCGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTACCCCAACATAGAGGAAGAAATGGTGGCGATGCTACAAATAGGGATGACTTGTGCTGAAAGAATACCGGATCAGAGACCAAAGATGCCTGATGTGGTGCGCATGATGGAGGAGATTCGTCGTGTAAATACGCCAAATCAACCATCCACCGAGTCTAGATCAGAAGTTTCTACACCCACACCTCGTGCAGTAGACATTCCTTCTACCTCTGTTCTACAGTGA 1899 0.455 MAKKLPLLYICSAALVMEAVLVSVVAEPVEDKQALLDFFYNMNHSPHVNWDKNTSVCQSWRGVTCNSDRSRVIALRLPGAGLSGPIPPNTLSRLSALEIVSLRSNGISGPFPDGFSELKNLTSLYLQSNEFSGPLPLDFSVWNNLSVVNLSNNYFNGSIPFSISNLTYLASLVLANNSFTGEIPDLNNPSLQELDLANNNLTGVVPKSLLRFPSSAFAGNNLTSAAALPPAFPVQPPAAHPAEKSKGLSEPALLGIIIGASVLGFVVIAGFMIVCCYQNADVDVQPMKSQKKQASLKTESSGSQDKNNKIVFFEGCNLAFDLEDLLRASAEILGKGTFGMTYKAALEDATTVVVKRLKEVTAGKRDFEQQMEVVGRVKHDNVDTVKAYYYSKEEKLIVYDYYQRGSVSAMLHGKGGEGRSPLDWDSRLRIAIGAARGIAHIHAYHGGKLVHGNIKASNIFLNSQGYGCISDIGLATLMSPIPVPAMRATGYRAPEVTDTRKATHASDVYSFGVLLLELLTGKSPINSTEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVAMLQIGMTCAERIPDQRPKMPDVVRMMEEIRRVNTPNQPSTESRSEVSTPTPRAVDIPSTSVLQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01421 632 Gene3D Transferase(Phosphotransferase) domain 1 403 618 - -
Spst9g01421 632 PANTHER OS05G0588300 PROTEIN 17 607 - -
Spst9g01421 632 ProSiteProfiles Leucine-rich repeat profile. 190 211 IPR001611 GO:0005515
Spst9g01421 632 Gene3D Ribonuclease Inhibitor 29 232 IPR032675 -
Spst9g01421 632 Pfam Leucine Rich Repeat 190 210 IPR001611 GO:0005515
Spst9g01421 632 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01421 632 ProSitePatterns Protein kinases ATP-binding region signature. 333 364 IPR017441 GO:0005524
Spst9g01421 632 SUPERFAMILY L domain-like 47 212 - -
Spst9g01421 632 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Spst9g01421 632 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Spst9g01421 632 MobiDBLite consensus disorder prediction 599 632 - -
Spst9g01421 632 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Spst9g01421 632 FunFam pollen receptor-like kinase 1 296 401 - -
Spst9g01421 632 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Spst9g01421 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 609 - -
Spst9g01421 632 Pfam Protein tyrosine and serine/threonine kinase 331 593 IPR001245 GO:0004672|GO:0006468
Spst9g01421 632 MobiDBLite consensus disorder prediction 601 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01421 Spst-Chr9 14147099 14149733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01421 8 619 Receptor kinase-like Gene Family AT4G23740 56.329 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst9g01421 PK_Tyr_Ser-Thr 2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01421 - - gmx:100813065 1099.35