Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01412 ATGTCAAACAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCATCCATCTCTGCTCTGAACCAGGAAGGGCTCTCTCTAATTTCATGGCTTTCAACCTTCAACTCCTCCAACTCTGTCTCTGCCTTCTCTTCATGGGATCCAACCAACAAAGATCCTTGCTCATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCCAGGCAGCTCCTTTCTTTAGGCCACCTCACCACTCTTGTCATCTCAAATGGCAATCTCACTGGTGAGATTCCAGGTTTTGTGGGAAACTTGTCCTCCTTGGTCACTTTGGACCTTAGCTTCAATGCTTTGTCAGGAAACATTCCAGAAGAAATAGGAATGCTATCTAAGCTGCAGTTGTTAATGTTGAATTCAAATTCCTTGAAGGGTGGAATTCCAACCACAATTGGAAACTGTTCAGAGCTTCGGCATCTGGCACTTTATGACAACCAGCTCTCTGGAATGATACCTGGAGAAATAGGCCAGTTGGGAGCTCTTGAAACTCTCAGAGTAGGAGGGAATCAAGGTATTCATGGAGAAATTCCAATGCAGATATCAAACTGCGAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGATTTCTGGGGAGATTCCACCAAGTATAGGAGAGCTTAAGAATCTCAAGACACTTTCAGTCTACACGACACATCTCACAGGTAATATCCCAGCAGAGATTCAGAACTGCTCAGCTTTGGAAGATTTGTTTCTGTACGAAAACCAGCTTTCTGGAAACATTCCTTACGAATTGGGCTCCATGCAAAGCCTCAAGAGGGTCTTGTTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTTGGGAACTGTACAAATCTCAAGGTTTTAGATTTCTCTTTGAATTCTCTGGGGGGTCAGATACCTGTGACTCTCAGTAAACTACTCTTACTGGAGGAGTTTCTTTTGTCTGATAATAATATTTATGGAGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGATAACAACAAATTCTCCGGGAAGATTCCACCTGTTATGGGGAAACTTAAGGAACTCACCCTCTTTTATGCCTGGCAGAATCAACTGAATGAAAATATACCAACAGAGCTATCCAACTGTGATAAACTTGAAGCACTTGATCTTTCACACAATTTCCTCACTGGTTCCATTCCAAATGCACTCTTTCATCTAGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGTTGGGATCAAACAACTTTACCGGTCATATTCCACCAGAAATAGGTCAATTAAGCAGTTTGAGCTTTCTTGAGTTGTCAAATAATCTACTCAGTGGAGATATTCCCACTGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACAGCAATGTGCTGGAAGGAACCATTCCTTCCTCATTGAAATTCCTAGTTGGTCTTAATGTGTTAGATCTTTCTACAAACAGAATAACTGGAAGCATTCCTGAGAATTTTGGCAAGCTTAAATCTCTGAATAAGTTTATTTTAAGTGGAAACCTTATCTCTGGTGTGATCCCAAGGACACTGGGGCTGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAATTATCCATCTTGGACCTCTCTCACAACAAGCTTACAGGTACACTCACCGTACTGGTTAGTCTTGACAATCTAGTGTCTCTAAATGTCTCCTACAACAGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCTTCCGCTGCATTTGTTGGTAACCCTGACCTTTGCATTAGCAGTTGTCATACAAGTGAAAATGGCCAAGGCTTCAACTCAATAAGAAATGTTATTGTCTACACTTTCCTTGGGATTGTTTTAGTTTCTATTTTTGTCACTTGTGGAGTAATTTTAGCTCTCAGGATTCATGGGGGAAACTTTGGCAAGAATTTTGATGAAGGTGATGAAACCGAATGGACTTTCACTCCATTCCAGAAAGTCAATTTCTCCATCAATGACATTTTAGCAAAGTTGTCAGAATCAAACATTGTTGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCAAATGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGATGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTATATATGCAACGGAAGTTTGTTTGGATTGCTTCATGAAAAGAGACTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCACAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTCGTGAGTTCCTCAGAGTGTGCAGGAGCCTCTCATACGGTTGCAGGTTCTTATGGATACATTGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTATACAGTTTCGGTGTTTTACTTCTTGAGGTCTTAACGGGGATTGGACCAACTGATAACAGGATTCCAGAGGGTGCCCACATAGTCACATGGGTTAGCAACGAAATCCGAGAGAAAAGAAGAGAATTTACGTCTATCCTCGACCAGCAACTAGTATTCCAGAGTGGCACAAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGTGTGAATCAATCACCAGAAGAACGACCTACCATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTCGAAAAACCGGATTTTCTTCATAAAGGCATGGCTGCAAATTCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCTTTAATAATAGAATCAACATCTTCTTCTTCTTCTTCCTAG 3270 0.411 MSNNALTLFILFLNISLCPSISALNQEGLSLISWLSTFNSSNSVSAFSSWDPTNKDPCSWDYITCSKEGFVSEIIITSIDMRSSFPRQLLSLGHLTTLVISNGNLTGEIPGFVGNLSSLVTLDLSFNALSGNIPEEIGMLSKLQLLMLNSNSLKGGIPTTIGNCSELRHLALYDNQLSGMIPGEIGQLGALETLRVGGNQGIHGEIPMQISNCEALVFLGLAVTGISGEIPPSIGELKNLKTLSVYTTHLTGNIPAEIQNCSALEDLFLYENQLSGNIPYELGSMQSLKRVLLWQNNLTGTIPESLGNCTNLKVLDFSLNSLGGQIPVTLSKLLLLEEFLLSDNNIYGEIPSYVGNFSRLKQLELDNNKFSGKIPPVMGKLKELTLFYAWQNQLNENIPTELSNCDKLEALDLSHNFLTGSIPNALFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGHIPPEIGQLSSLSFLELSNNLLSGDIPTEIGNCAHLELLDLHSNVLEGTIPSSLKFLVGLNVLDLSTNRITGSIPENFGKLKSLNKFILSGNLISGVIPRTLGLCKDLQLLDISNNRITGSIPDEIGHLQGLDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGSLPDTKFFRDLPSAAFVGNPDLCISSCHTSENGQGFNSIRNVIVYTFLGIVLVSIFVTCGVILALRIHGGNFGKNFDEGDETEWTFTPFQKVNFSINDILAKLSESNIVGKGCSGIVYRVETQMKQIIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECAGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVLLLEVLTGIGPTDNRIPEGAHIVTWVSNEIREKRREFTSILDQQLVFQSGTKTSEMLQVLGVALLCVNQSPEERPTMKDVTAMLKEIRHENDDFEKPDFLHKGMAANSKAAVHCSSFSRSCEPLIIESTSSSSSS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01412 1089 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Spst9g01412 1089 SUPERFAMILY RNI-like 303 663 - -
Spst9g01412 1089 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Spst9g01412 1089 PRINTS Leucine-rich repeat signature 408 421 - -
Spst9g01412 1089 PRINTS Leucine-rich repeat signature 622 635 - -
Spst9g01412 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Spst9g01412 1089 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Spst9g01412 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Spst9g01412 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Spst9g01412 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Spst9g01412 1089 Gene3D Ribonuclease Inhibitor 221 324 IPR032675 -
Spst9g01412 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Spst9g01412 1089 SUPERFAMILY Protein kinase-like (PK-like) 747 1047 IPR011009 -
Spst9g01412 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 431 1039 - -
Spst9g01412 1089 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01412 1089 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Spst9g01412 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Spst9g01412 1089 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01412 1089 SUPERFAMILY RNI-like 84 418 - -
Spst9g01412 1089 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01412 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Spst9g01412 1089 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Spst9g01412 1089 Pfam Leucine rich repeat 142 200 IPR001611 GO:0005515
Spst9g01412 1089 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Spst9g01412 1089 Gene3D Ribonuclease Inhibitor 325 425 IPR032675 -
Spst9g01412 1089 Gene3D Transferase(Phosphotransferase) domain 1 842 1060 - -
Spst9g01412 1089 Gene3D Ribonuclease Inhibitor 427 693 IPR032675 -
Spst9g01412 1089 Gene3D Phosphorylase Kinase; domain 1 732 841 - -
Spst9g01412 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Spst9g01412 1089 Gene3D Ribonuclease Inhibitor 23 220 IPR032675 -
Spst9g01412 1089 SMART LRR_typ_2 622 641 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 477 501 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 333 357 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 140 164 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 285 309 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 116 139 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 429 453 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 549 572 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 525 548 IPR003591 -
Spst9g01412 1089 SMART LRR_typ_2 645 678 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01412 Spst-Chr9 14063802 14067356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01412 23 1057 Receptor kinase-like Gene Family AT5G56040 47.338 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst9g01412 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01412 - - gmx:100780101 1903.64