Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01398 ATGGAGGATTCTTCGGCAGGTGACGACCCCAAGACTTGTCCCCGTGGCCACTGGAGACCTGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATATGGTGCTCAAAACTGGAATTCAATTGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTCGACCCAAGAATCAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGATTACTCGCAGCTCATCGCATTCACGGGAATAAGTGGGCTCTCATAGCGAGGCTTTTCCCTGGTCGAACTGATAATGCTGTGAAGAATCACTGGCACGTTATAATGGCGAGAAAACAAAGGGAACAATCCAAGTTATGTGGGAAAAGAAGTTTCCAAGATGTTTACAACGATTCCAACACGTTCCTCGAAAAGAGAACACCACAATCTCATCAAGACCTATTGTTTAGTACGAGATTTGGGTTGGAGAATGGAAGATTCTTTGACTTTCGGAGCCTCGATAGTAACAAGGATAATAACAATAGCAATAATAGGATAGTTGCTGATAGTACTACTCCCTCTAGTTCTCTGGCGTCTTGGAATTTTTCCTCTGTGCCAACCACCACAAACGGTTCTACTGTAGTGGATAGAAAAGGAGGGAGAGACTATTTCAACAGTTCTTGCTCTTCTAGTGTTTATCTCTCAGAATGTTCCAGAAGCTCAGATAGATCGTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTACCCAACTATAAGAGGGTTGTTCCAACAAGTCCTTTCAGTTTCCTCGGTTCTGATAATGATGGAAGGATAAAGAGGGACTTGATGAGTTTCTGCGATAATAACTCATCCACATTCACCAAGTTGAAGGCTTCCACGGAGAAAGATCACCAACAACAAAAAAATGAAGATGAGACCAGTATCGAGCCCAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTAGGTGTCTCTTCATAA 993 0.425 MEDSSAGDDPKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNTFLEKRTPQSHQDLLFSTRFGLENGRFFDFRSLDSNKDNNNSNNRIVADSTTPSSSLASWNFSSVPTTTNGSTVVDRKGGRDYFNSSCSSSVYLSECSRSSDRSFLYRIYPNPAFSLPNYKRVVPTSPFSFLGSDNDGRIKRDLMSFCDNNSSTFTKLKASTEKDHQQQKNEDETSIEPKEVPFIDFLGVGVSS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01398 330 CDD SANT 18 59 IPR001005 -
Spst9g01398 330 Gene3D - 69 149 - -
Spst9g01398 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Spst9g01398 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst9g01398 330 SMART sant 14 63 IPR001005 -
Spst9g01398 330 SMART sant 66 114 IPR001005 -
Spst9g01398 330 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Spst9g01398 330 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Spst9g01398 330 PANTHER MYB PROTEIN-RELATED 15 221 - -
Spst9g01398 330 Gene3D - 15 66 - -
Spst9g01398 330 Pfam Myb-like DNA-binding domain 18 78 - -
Spst9g01398 330 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g01398 330 MobiDBLite consensus disorder prediction 295 316 - -
Spst9g01398 330 CDD SANT 69 109 IPR001005 -
Spst9g01398 330 FunFam MYB transcription factor 68 138 - -
Spst9g01398 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst9g01398 330 FunFam MYB transcription factor 15 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01398 Spst-Chr9 13941882 13943170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01398 13 122 MYB Transcription Factor Family AT1G17950 84.545 2.28e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g01398 Myb_DNA-bind_6 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01398 K09422 - gmx:100817328 547.74