Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01368 ATGTTAAACTATTGCTTAAATCTCAAAGTTCTTGATGATGAATTGCATGCAGCAATGGCTTCCTCACTTGATAGTACCAAAGTTGTGCTAGTTGCTTGCTTGCTAGTAGTGATCTCAGCAATGTCACAAACAATTCATCCTAGCTGCAAAAGTAAATGTGGAAGTGTTAGCATTCCGTACCCATTTGGTACAACTGAGGACTGTTACTTGAACAACAACTTTCATGTTGCTTGTAACTCAAGTCACAAGCCTCCAAAACCATTTCTGTGGAATGTGACAAAAAATATTGAGATCTTAGAGGTGTCATTGAATGGTCATTTGCAGGTAAAATCCCCAGTAGCTTATGTCTGTTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAACTCATCTATGACTTTGCAAGCATTCCCCTTCTCATACACCCAAAACAAGTTCGTTGGAATTGGATGCGACACCCTTTCGACCATCAATGCAACAATTGGGAACAGCTACTCGGCTGGAGGGTGTTTTTCACTTTGTAATAGTGTAGAAAGTTCAACCAATGGATCCCGGTTTGGCATTGGTTTCTGCCAAACCTCTATCCCAAAAAACATTTTAGCATATCAAGCTCGTGTCCTGAGATCAAATTTGCGGCATAGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTTGAAGAAGACTCTTTCAAGTTTTCAACGGATGACTTCATCAAACTGCAGAAGAGAAGAACAGTTCCCACAGTGCTTGATTGGGCTGTTGGGAATCTAACATGTGAAGAAGCTAAGAAAAATTTGACTAGTTATGTCTGCCAAGAAAATAGCGTATGTATTGATTCTCACAATGGACCAGGGTATCTCTGCGGATGCTTAGAAGGTTATGTGGGAAATGCATACCTTCATGGTGGATGCCAAGATATTGACGAGTGTGCCAATCCGAGTCTAAATGACTGTTCAGACATTTGCATTAACCTACCTGGGAGCTATAATTGTTCTTGTCCCAAGAACAGGAAGCACCAGGGAGATGGCAGAAAAGGAGGAAGTGGCTGTGTCTCGAATCTACAACATGTTGTTAACGAGATTTTGATAGGAACTGGCATAGGTCTTGTGCTGTTTTTATTTGGTAGCGGCTGGCTATACCACGTGTTTCGTAAAAGGAAACAGGTGAAGCTCACAGCAGGATATTTTAAGAGAAATGGTGGCTTAATGTTACAGCAGCAAATTTCAAACATGGAGGGATCATCTGAGAGAGCTAAAATATTTACTGCAAGAGAGCTAAAGAAAGCCACTGAAAACTTTCACGAGAGCAGAATCATTGGCAGAGGAGGATACGGCACAGTTTATAAGGGAATCCTTCCAAATGACCAAGTTGTTGCCATAAAGAAATCAAAACTAGTAGACCACAGCCAAACTGAACAATTTGTCAATGAAGTGGTTGTACTTTCCCAAATTAACCACAGAAATGTGGTCAAACTCCTAGGTTGCTGTCTAGAGACAGAAATGCCACTGCTAGTTTATGAATTTGTGAACAACGGAACACTCTATGACCACATTCACAATGAAAACACCACGCTTCCCTGGGAAACACGTCTAAGAATAGCAGCAGAAACAGCTGGTGTGCTTGCATACTTGCATTCCTCTGCCTCCATACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACAGCTAAGGTTTCTGACTTCGGAACCTCTAGATTGGTTCCGCGTGACAAGTGCCAGTTGACAACCTTGGTTCAGGGAACTCTTGGGTACCTTGACCCTGAATACTTTCAGACCAGTCAACTGACTGAGAAAAGTGATGTGTATAGCTTTGGTGTTGTACTTGCTGAGTTGCTAACTGGAAGAAGGGCACTTTCTTTTGACATGCCAGAGGAGGAGAGGAATTTGGCCTTGTATTTCCTTTCGGCTGTGAAGGATGATTGCTTGTTCCAAATTGTCGAGGATTGTGTCAATGAAGGAAATAGTGAGCAGGTGAAGCAAGTTTCCAACATTGCTCAATGGTGCTTGAGGCTTAGAGGTGAGGAAAGACCTACCATGAAGGAAGTTGCAATGGAATTGGAAAGTCTCAAAATGATGTCAACAACAACTACATTGATTAATGCCTCATCAAATGAATCAGAATATGTTATTGGTGAAATATCAGGTTCAACAGAAAGAGACTCTGCTAATTGTCGTTATACGTATGCTACATGCGCTGGGCCTGAGGATGATACCGTTTGCAACGATGTGATGTCACCGTTATGGGATGGTAGATGA 2301 0.4172 MLNYCLNLKVLDDELHAAMASSLDSTKVVLVACLLVVISAMSQTIHPSCKSKCGSVSIPYPFGTTEDCYLNNNFHVACNSSHKPPKPFLWNVTKNIEILEVSLNGHLQVKSPVAYVCYDEKGVLVDSGNSSMTLQAFPFSYTQNKFVGIGCDTLSTINATIGNSYSAGGCFSLCNSVESSTNGSRFGIGFCQTSIPKNILAYQARVLRSNLRHRDMNIPCSYSLLVEEDSFKFSTDDFIKLQKRRTVPTVLDWAVGNLTCEEAKKNLTSYVCQENSVCIDSHNGPGYLCGCLEGYVGNAYLHGGCQDIDECANPSLNDCSDICINLPGSYNCSCPKNRKHQGDGRKGGSGCVSNLQHVVNEILIGTGIGLVLFLFGSGWLYHVFRKRKQVKLTAGYFKRNGGLMLQQQISNMEGSSERAKIFTARELKKATENFHESRIIGRGGYGTVYKGILPNDQVVAIKKSKLVDHSQTEQFVNEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLYDHIHNENTTLPWETRLRIAAETAGVLAYLHSSASIPIIHRDFKSTNILLDDKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDMPEEERNLALYFLSAVKDDCLFQIVEDCVNEGNSEQVKQVSNIAQWCLRLRGEERPTMKEVAMELESLKMMSTTTTLINASSNESEYVIGEISGSTERDSANCRYTYATCAGPEDDTVCNDVMSPLWDGR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01368 766 SMART egf_5 310 352 IPR000742 -
Spst9g01368 766 SMART egf_5 259 306 IPR000742 -
Spst9g01368 766 FunFam Wall-associated receptor kinase 2 258 309 - -
Spst9g01368 766 CDD STKc_IRAK 440 704 - -
Spst9g01368 766 Pfam Calcium-binding EGF domain 307 339 IPR001881 GO:0005509
Spst9g01368 766 CDD EGF_CA 307 335 - -
Spst9g01368 766 Pfam Wall-associated receptor kinase galacturonan-binding 49 106 IPR025287 GO:0030247
Spst9g01368 766 ProSitePatterns Calcium-binding EGF-like domain signature. 307 332 IPR018097 GO:0005509
Spst9g01368 766 SUPERFAMILY EGF/Laminin 306 344 - -
Spst9g01368 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672|GO:0006468
Spst9g01368 766 Gene3D Laminin 310 346 - -
Spst9g01368 766 Pfam Protein kinase domain 434 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01368 766 FunFam Wall-associated receptor kinase 2 404 509 - -
Spst9g01368 766 ProSiteProfiles Protein kinase domain profile. 434 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01368 766 FunFam Wall-associated receptor kinase 2 510 724 - -
Spst9g01368 766 ProSitePatterns Protein kinases ATP-binding region signature. 440 463 IPR017441 GO:0005524
Spst9g01368 766 SMART egfca_6 260 306 IPR001881 GO:0005509
Spst9g01368 766 SMART egfca_6 307 352 IPR001881 GO:0005509
Spst9g01368 766 SUPERFAMILY Protein kinase-like (PK-like) 420 717 IPR011009 -
Spst9g01368 766 Gene3D Phosphorylase Kinase; domain 1 399 509 - -
Spst9g01368 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 42 709 IPR045274 GO:0007166
Spst9g01368 766 Gene3D Laminin 259 309 - -
Spst9g01368 766 Gene3D Transferase(Phosphotransferase) domain 1 510 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01368 Spst-Chr9 13415623 13419163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01368 49 741 Receptor kinase-like Gene Family AT1G21230 44.648 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Spst9g01368 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01368 - - var:108330433 1391.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01419 8 13367332 13371119 Spst9g01368 9 13415623 13419163 PCT