Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01359 ATGGGAACAGATGGAACAAGCGATGCGGATAAGACCGAATGTGGTGAACGACTCCAGTGTTTGAAAGATGAGGCCATGAATGGTGAGGTGACAATTAAAGATGGGAATTGTGTTACTGAAGAGAGACAGCATTTGAAAAGTGAAACCATGAATGATGGGGTGAAAATTGCTGATGCAAATGGTGTTGGTGGAGAGGTTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGGATATAAAGGGGATTCTGGTGGAGTTGAATGTTTGCGAACTTATAAGAGGCGCAAGAAGTCAAGTTCAAAAGGCAAAGTTCAGGAACAATGCAGAGCAGGCATGAGAACTTCGAGTCTAATAGCAGCACAGCATGGCATGATTCTCACCCTGGAAGATAAATGTTCTGAAGACGTGAAGAAACCGTGTGATCTAGCTTTAGGCAATACTTCAGATGAGTGTTCCCAAGGACAGTGGGGAAATATTGTGCTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGAAATGGCGGCATAGTGGGTTGCATAAAGGAAGCACTTAATCCTAAACATAATCATCCCATTAGTTCTATGGAAACATTAATAATTGACAAAGATGGTCAAGAATGCGCTTCACAATTTGAGCAGCTTTCCCGTAGAACAGTAAAGGAATCTAATCGACATGCAGATGTCCTGTGTAATGGACGTTCCAGTGAATCACCTGATCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGTAATATCTTAACCTCAGAAAATTTCAGTTCATTATGTAAGGCTTTACTTGGAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACAATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAAAAATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTCTCCAGTATATCAACAACTTCTTACTCTGAGCTGTTCAACAATCGAGAATTTGGCTCTCACTTGAAACCAGAACGGACGCAAGAATGTGCTATGTACAAAATTTGCAGTTGCAGCCGTTGCGGAGAGCAGGCGGATGGCAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGGCGGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAAGTGTACTGCTAATGGGATTGGATCTCCACATGAGAATTGTGTGCTATGTGAAAGGCTAAGTGATGAACAGACCCCAAATGACATTATTGATGATGAAAGCTTTCCTACAATTGAGGAAACACAAAATGAATATGAAGAGAATTCAAATTGCACCTCTGTTGGGAATCAGGTTTCTGTAGGTGAGAAAAAAACACACATTTGCAAAATTTGTAGAAATGAAGTGGCTGGTAAAAAAATAAAAGTATGTGGCCATAGGTTTTGCTCCAACAAATATTACCATGTAAGGTGTTTAACAAAAAGGCAGTTAACGACATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTGTGTTTGCTTAATTGATCGTGATGATGATCAGATTGTTATCTGTGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTCCTCAGACATCTATTCCAAGAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATTCAAGCAATCCACAAGGCCAAAAAGGTGTATGAAAGTAACAAACCAAGCAGAAATAGGGAAGATGCTGCAAAGCCAAATGCTAATCTTGAAAAGAAACAATGCAATAAACGTGCAAGAGAATTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATACTCTGCATTTTGAGGAGAAGGAGGCGGCAATCCGGATTGAGTCACAGACAACCTGA 1944 0.412 MGTDGTSDADKTECGERLQCLKDEAMNGEVTIKDGNCVTEERQHLKSETMNDGVKIADANGVGGEVRVLKSEPFSNGVAVGYKGDSGGVECLRTYKRRKKSSSKGKVQEQCRAGMRTSSLIAAQHGMILTLEDKCSEDVKKPCDLALGNTSDECSQGQWGNIVLKHLYQSLGDGNGNGGIVGCIKEALNPKHNHPISSMETLIIDKDGQECASQFEQLSRRTVKESNRHADVLCNGRSSESPDHGVTEMCQRVLCNILTSENFSSLCKALLGNFQGMKPESVFDFTIMNSRMKEQAYEKSPALFLSDIQQVWRKLQDTGNEIVALAKSLSSISTTSYSELFNNREFGSHLKPERTQECAMYKICSCSRCGEQADGKDCLVCDSCEEIYHVSCIEPAVKEIIPHKSWYCAKCTANGIGSPHENCVLCERLSDEQTPNDIIDDESFPTIEETQNEYEENSNCTSVGNQVSVGEKKTHICKICRNEVAGKKIKVCGHRFCSNKYYHVRCLTKRQLTTYGHCWYCPSCLCCVCLIDRDDDQIVICDGCDHAYHIYCMKPPQTSIPRGKWFCRKCDAGIQAIHKAKKVYESNKPSRNREDAAKPNANLEKKQCNKRARELERGGAMDMLLTAANTLHFEEKEAAIRIESQTT 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01359 647 SUPERFAMILY FYVE/PHD zinc finger 362 412 IPR011011 -
Spst9g01359 647 SMART PHD_3 365 412 IPR001965 -
Spst9g01359 647 SMART PHD_3 476 525 IPR001965 -
Spst9g01359 647 SMART PHD_3 526 571 IPR001965 -
Spst9g01359 647 Pfam PHD-finger 366 413 IPR019787 -
Spst9g01359 647 Pfam PHD-finger 526 571 IPR019787 -
Spst9g01359 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 577 IPR013083 -
Spst9g01359 647 ProSiteProfiles Zinc finger PHD-type profile. 523 573 IPR019787 -
Spst9g01359 647 ProSiteProfiles Zinc finger RING-type profile. 477 524 IPR001841 -
Spst9g01359 647 Gene3D - 265 415 - -
Spst9g01359 647 ProSiteProfiles Zinc finger PHD-type profile. 363 414 IPR019787 -
Spst9g01359 647 SUPERFAMILY FYVE/PHD zinc finger 525 573 IPR011011 -
Spst9g01359 647 FunFam PHD finger protein EHD3 isoform A 268 415 - -
Spst9g01359 647 PANTHER OS02G0192300 PROTEIN 350 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01359 Spst-Chr9 13294967 13301996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01359 525 594 C2H2 Transcription Factor Family AT3G01460 42.857 5.41e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g01359 PHD 5.2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01359 - - gmx:100795906 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01359 9 13294967 13301996 Spst9g01359 9 13294967 13301996 ECH
Spst8g01413 8 13299589 13323620 Spst9g01359 9 13294967 13301996 PCT