Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01350 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGACGTCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCTAAGCATGAGGTTAACACAATATCGTTGTTGAACTCACTGCAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAGGATATTACGTCACTGAATTACAAGGAACTGATGGCCCTAGAGGACGCCCTTCAAAATGGCCTCAATGGCGTCCATGAAGTTAAATATTTGCGCACTCCTTTAGAAAGAGAATATCAAGTTTTAGGGACGTGTCCTAAGAGGAAAAATAGAAAGAAAGGAGAAAATGTTGATGAATGA 543 0.4236 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHEVNTISLLNSLQNLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALQNGLNGVHEVKYLRTPLEREYQVLGTCPKRKNRKKGENVDE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01350 180 Coils Coil 88 122 - -
Spst9g01350 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 Pfam K-box region 94 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g01350 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Spst9g01350 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Spst9g01350 180 Gene3D - 89 134 - -
Spst9g01350 180 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Spst9g01350 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst9g01350 180 ProSiteProfiles K-box domain profile. 95 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst9g01350 180 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01350 Spst-Chr9 13220192 13226535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01350 1 149 MADS-box Gene Family AT5G20240 64.901 1.95e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst9g01350 K-box 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01350 K09264 - gmx:100795861 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01350 9 13220192 13226535 Spst9g01350 9 13220192 13226535 ECH
Spst8g01400 8 13078038 13081245 Spst9g01350 9 13220192 13226535 PCT