Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01331 ATGTCGACTCAGAATCGTCGTTCTTCGTTTTCGTCCTCAACGACGTCGTCTTTGGCCAAGCGCCATGCATCCAACGCTTCCTCCGCAGCAACGTCGTCTTCAGCCCTTCCTACAAACATGGCCAAGAAGCGTCCACCTCTTTCTAACCTCACCAACACCGTCGCTCACCGCAACTCTTCCTCTTCGGTCCCGTGCGCAGCTAAAGTTGCGAAGACGAAGAAAGAGGTTGTTGCGGCGTCCTCAGGCAATAAAAGGCCCACGTTGGCGAATGTTAAACCTACTAATGCAGTTGTTTTTCCTAAGGCTAATTCTCTCCATGTGAGGAATGAAGCTCCTCCTCCCCCTCCTCCGGTTGTTGTCACTGTTACTGTTCCTCCTCCGGTGGTGGATGTCTCACCTAGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGTCCTGATGTTGAATATGTCGACAATAGTGATGTTGCAACCGTTGATTCAATTGAGAGGAAGACATTTAGCAATCTCAATATCTCTGATTCTACAGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGAAAAGTTTGTCAATGTTGATAACAATTACGCGGATCCTCAGTTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAAAATTCAGAAGGACATAAACCCCAGCATGCGTGCAATATTAATTGACTGGCTTGTGGAGGTTGCTGAAGAGTATAGACTGGTACCTGATACATTGTATTTGACGGTAAACTACATTGACCGGTACCTTTCAGGAAATGTGATGAACAGACAAAGGTTACAATTACTTGGTGTTGCCTCCATGATGATTGCATCTAAATACGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTTTTAAATTTTCTCAAGTTCGAAATGACAGCCCCTACAGTAAAATGTTTCTTAAGAAGATTTGTACGTGCAGCTCAAGGAGTCGACGAGGAGGACCCTTCGCTGCAACTAGAGTGCTTGACGAACTATATTGCCGAATTGTCTCTCTTGGAGTACAATATGCTTTGTTATGCTCCATCACTTGTAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTCGCTCTTCAACGAAACCATGGAATTCCACATTGCAGCATTACACACTCTACCAGCCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTTTGTGTTAACAGCCCTAACTCTAGTTTGCCCGCAATTAGGGAGAAATATAGTCAGCACAAGTACAAACATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTCCAGAATTTTTCCTGAGTTGA 1467 0.4451 MSTQNRRSSFSSSTTSSLAKRHASNASSAATSSSALPTNMAKKRPPLSNLTNTVAHRNSSSSVPCAAKVAKTKKEVVAASSGNKRPTLANVKPTNAVVFPKANSLHVRNEAPPPPPPVVVTVTVPPPVVDVSPSKSDAMSVSMDESMSSCDSFKSPDVEYVDNSDVATVDSIERKTFSNLNISDSTESGNICSRDILVELEKGEKFVNVDNNYADPQFCASFACDIYKHLRASEAKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEEDPSLQLECLTNYIAELSLLEYNMLCYAPSLVAASAIFLAKFILRSSTKPWNSTLQHYTLYQPSDLCVCVKDLHRLCVNSPNSSLPAIREKYSQHKYKHVAKKYCPPSIPPEFFLS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01331 488 SMART cyclin_7 261 345 IPR013763 -
Spst9g01331 488 SMART cyclin_7 358 447 IPR013763 -
Spst9g01331 488 Pfam Cyclin, C-terminal domain 354 474 IPR004367 -
Spst9g01331 488 Pfam Cyclin, N-terminal domain 225 351 IPR006671 -
Spst9g01331 488 MobiDBLite consensus disorder prediction 1 66 - -
Spst9g01331 488 SUPERFAMILY Cyclin-like 214 351 IPR036915 -
Spst9g01331 488 FunFam Cyclin A1 341 474 - -
Spst9g01331 488 CDD CYCLIN_AtCycA_like_rpt1 215 350 - -
Spst9g01331 488 CDD CYCLIN_AtCycA-like_rpt2 354 469 - -
Spst9g01331 488 PIRSF Cyclin_A_B_D_E 1 483 IPR046965 GO:0016538|GO:0044772
Spst9g01331 488 SMART Cyclin_C_2 354 478 IPR004367 -
Spst9g01331 488 Gene3D - 225 474 - -
Spst9g01331 488 Gene3D - 239 352 - -
Spst9g01331 488 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
Spst9g01331 488 MobiDBLite consensus disorder prediction 1 68 - -
Spst9g01331 488 FunFam Mitotic cyclin 6 239 339 - -
Spst9g01331 488 PANTHER CYCLINS 165 466 IPR039361 -
Spst9g01331 488 SUPERFAMILY Cyclin-like 354 480 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01331 Spst-Chr9 12932576 12935721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01331 4 486 Core Cell Cycle Gene Families AT1G44110 62.295 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01331 K06627 - gmx:547781 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01331 9 12932576 12935721 Spst9g01331 9 12932576 12935721 ECH
Spst8g01384 8 12931844 12935231 Spst9g01331 9 12932576 12935721 PCT