Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01329 ATGGCGCCAATCATGCAGGGCTCTCAGCAATGGGTCGAGAAATACCGACCGAAGCAAGTGAAAGACGTTGCCCACCAAGAGGAAGTTGTTCGAGTGCTAACAAATACCCTTGATACTGGAAGTTGCCCCCACATGCTCTTTTATGGTCCTCCCGGCACTGGAAAAACAACTACTGCCCTCGCAATTGCCCATCAGCTTTTCGGGCCTGAGCACTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGACAGAGGGATTAATGTTGTTCGAACAAAGATAAAAAATTTTGCTGCGGTGGCTGTTGGTGCTAGGCGCAAGAATGAAGTTTATCCTTGTCCATCATTTAAGATTATTGTTCTAGATGAGGCTGATTCAATGACAGAAGATGCTCAGGCATGTTTGCTATGTTTTTCATTTCTAACTTTTCTTGTCTCAAAGTGTTCTGTTTTCAAACCACGTGCAATTGCTGTCCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTGAGCAGGATTATAGAACCACTTGCTTCGAGGTGTGCAAAATTCAGGTTCAAGCCCTTATCAGAAGAAATCATGAACAGCCGGATATTATACATCTGCAAAGAAGAGGGACTCTGTCTTGATGCTCAGGCTCTTTCAACCCTTAGTTCTATTTCTCATGGAGATCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTCCAGAGAATCTGGTTTCTGTGTCTGGGGTTGTTCCAGAAAAAGTTGTGGAGGCAGTTCTTCAAGCTTGTAGAAGTGGTAATTTTGATATCGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATGCTTATTCAGTTATTAGAAGCCATTGTTGAAGAAAATGACATATCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGTGAAGCTGATAAGTGTCTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCAATACAATGCAAGCTTTTAGTAACATGCCAGAAGGATTTGCTTACGAGAGTTAG 1110 0.4252 MAPIMQGSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLDTGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEHYKSRVLELNASDDRGINVVRTKIKNFAAVAVGARRKNEVYPCPSFKIIVLDEADSMTEDAQACLLCFSFLTFLVSKCSVFKPRAIAVQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMNSRILYICKEEGLCLDAQALSTLSSISHGDLRRAITYLQSAARLFGSSISPENLVSVSGVVPEKVVEAVLQACRSGNFDIANKEVNNFIAEGYPASQMLIQLLEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMQAFSNMPEGFAYES 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01329 369 Pfam Replication factor C C-terminal domain 267 352 IPR013748 -
Spst9g01329 369 Pfam ATPase family associated with various cellular activities (AAA) 45 199 IPR003959 GO:0005524|GO:0016887
Spst9g01329 369 SUPERFAMILY post-AAA+ oligomerization domain-like 267 352 IPR008921 GO:0003677|GO:0006260
Spst9g01329 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 261 IPR027417 -
Spst9g01329 369 Gene3D - 203 266 - -
Spst9g01329 369 FunFam Replication factor C subunit 4 203 266 - -
Spst9g01329 369 CDD AAA 26 193 - -
Spst9g01329 369 CDD HLD_clamp_RFC 201 260 - -
Spst9g01329 369 Gene3D - 267 356 - -
Spst9g01329 369 FunFam Replication factor C subunit 4 267 356 - -
Spst9g01329 369 SMART AAA_5 41 211 IPR003593 GO:0016887
Spst9g01329 369 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 136 - -
Spst9g01329 369 Gene3D - 3 200 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01329 Spst-Chr9 12913987 12924734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01329 1 365 Core DNA Replication Machinery Family AT1G21690 70.492 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01329 K10755 - gmx:100798331 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01329 9 12913987 12924734 Spst9g01329 9 12913987 12924734 ECH