LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01326	ATGGCGAGCTTGATGCAACAGCAACCACAGGGAGTTAATGGAGGTAGCAACCGCATAGTAGCCGTCGATGTCTCTCCCTCTAACAACCTTCCTGCACCATCTCATCATGACGCCACCTCAAATCCTGAGAAGCCTGGGTGGAAGAAGTTCCTGGCATATGTAGGTCCTGGCTTTCTGGTCTCCTTGGCCTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGCTCACAAATATGAGCTGCTCTGGGTAATACTCATTGGATTGGTGTTTGCGCTTATAATTCAATCGTTGGCTGCGAATCTTGGCGTGTCCACGGGAAAACACCTTTCAGAATTGTGTAAAGTCGAATATCCTTTATTGGTGAAGTACTGCTTATGGTTATTAGCTGAGCTTGCTGTCATAGCAGCAGACATACCTGAAGTGATTGGCACAGCCTTCGCGTTGAACATTCTCTTCAACATCCCTGTATGGGTAGGAGTTCTGCTGACTGGCTGCAGCACCCTCTTGTTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTGGAGCTGCTGATATCAGTGCTAGTTTTTATAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAACCACCTGTGTCTGGTGTATTAAAAGGAATGTTTGTGCCAAAACTAAGTGGTCAAGGAGCCACAGGCGATGCTATTGCTCTTTTGGGTGCCCTTGTCATGCCGCACAATCTCTTCCTCCACTCAGCTCTGGTCCTGTCTAGAAAAGTACCCAGTTCCGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATGGAAAGTGGGTTCGCACTGTTTGTTGCATTCCTAATCAATGTTGCAATGGTTTCTGTGTCCGGTGCTGTTTGCTCTGCTGACAATCTTTCTGCAGAAAATGCTGGTCAATGCAACGATCTTACCCTTAACTCTGCTTCTTTTCTTCTCAAGAATGTGTTGGGACGGTCGAGCTCTACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCAGCTATCACTGGAACCTATGCAGGGCAATTCATCATGCAGGGTTTCTTGGACATGAGGATGAAAACATGGATTAGAAACTTTTTAACTAGGTGCGTTGCCATAACACCTAGTCTTATAGTTTCAATCATTGGGGGTTCTCAAGGGGCTGGTCGGCTTATCATCATTGCATCGATGATACTTTCATTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTCAGCAGTAGCAGTTCCAAGATGGGACCTCACACGAATTCTATAATTATCATTGTCTTGTCATGGATTCTGAGCTTTGGAATCATTGGTATCAATGTGTACTACCTCTCTACAGCCTTCGTGGGTTGGATAATTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATCGGGATCGTAGTGTTTCCTCTAATGGCAGTTTATGTTGGTGCAATAATATACCTAACATTCAGAAAAGACACTGTTCAGACATATACTGAGACAAAGAATGAACCAGCAATGCAAACCCACATGGAGAAGGGGTTTATGACTGATGGTCAATTAGAGTTGAGTGAAGTTCCCTACAGAGAAGACTTGGCTGATATCCCCCTACCTCATTAG	1635	0.4489	MASLMQQQPQGVNGGSNRIVAVDVSPSNNLPAPSHHDATSNPEKPGWKKFLAYVGPGFLVSLAYLDPGNMETDLQAGAAHKYELLWVILIGLVFALIIQSLAANLGVSTGKHLSELCKVEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFNIPVWVGVLLTGCSTLLFLGLQRFGVRKLELLISVLVFIMAGCFFGEMSYVKPPVSGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLMESGFALFVAFLINVAMVSVSGAVCSADNLSAENAGQCNDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDMRMKTWIRNFLTRCVAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSSSKMGPHTNSIIIIVLSWILSFGIIGINVYYLSTAFVGWIIHNSLPKVANVFIGIVVFPLMAVYVGAIIYLTFRKDTVQTYTETKNEPAMQTHMEKGFMTDGQLELSEVPYREDLADIPLPH	544

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g01326	544	NCBIfam	Nramp family divalent metal transporter	55	421	-	-
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	370	387	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	232	255	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	402	421	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	342	361	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	182	203	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	129	155	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	PRINTS	Natural resistance-associated macrophage protein signature	157	176	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	NCBIfam	metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	48	424	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Spst9g01326	544	Hamap	Divalent metal cation transporter MntH [mntH].	34	458	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01326	Spst-Chr9	12899656	12903247	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01326	15	544	Inorganic Solute Cotransporters	AT1G15960	59.774	0.0	637

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01326	K21398		-	gmx:100787785	983.4

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g01326	9	12899656	12903247	Spst9g01326	9	12899656	12903247	ECH

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