Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01303 ATGACGACTCACCCCATGGACATTGACAGCGACAGCGACGATCTCACTCACACCTTGGGGCCCGGCGGAAGTGTCATAATTGCCGACGACCCTGAAGCTGACGAGAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATTGTTGATACCATTGATAAGCTGACCACGGAGAACAGATTGCCGCATCTTTTATTGTATGGCCCACCTGGAACGGGCAAAACATCAACCATTCTCGCTGTGGCACGCAAAATGTATGGTCCAAACTTCCACAGTATGATTTTGGAACTCAATGCATCGGATGACAGAGGAATTGATGTCGTGCGACAGCAGATTCAAGATTTTGCTAGTACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAACTGGTATTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAGTTTGCATTACGTAGAGGTATTATTCCTGCACTTCAATCTAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCCATCCATGTCACTGAAAGACTGAAACATGTTATTGAGGCTGAAGGGCTTGATGTTCAAGATGATGGTTTAGTAGCTATTGTTCGGCTTTGCAATGGTGATATGAGAAAGGCTTTGAATACTCTTCAGTCAACAAATATGGCTACTCAGAAGATAACAGAAGAAGCTGTTTACCTTTGCACTGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAACGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACCAGAAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAACTTGGATCAGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACATAG 1029 0.4383 MTTHPMDIDSDSDDLTHTLGPGGSVIIADDPEADEKAIPWVEKYRPQSLDDVAAHRDIVDTIDKLTTENRLPHLLLYGPPGTGKTSTILAVARKMYGPNFHSMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRGIIPALQSRCTRFRFAPLDAIHVTERLKHVIEAEGLDVQDDGLVAIVRLCNGDMRKALNTLQSTNMATQKITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01303 342 Pfam Replication factor C C-terminal domain 243 329 IPR013748 -
Spst9g01303 342 Pfam ATPase family associated with various cellular activities (AAA) 74 173 IPR003959 GO:0005524|GO:0016887
Spst9g01303 342 Gene3D - 28 178 IPR027417 -
Spst9g01303 342 CDD AAA 58 160 - -
Spst9g01303 342 Gene3D - 243 340 - -
Spst9g01303 342 CDD HLD_clamp_RFC 178 240 - -
Spst9g01303 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 236 IPR027417 -
Spst9g01303 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 39 324 - -
Spst9g01303 342 FunFam Replication factor C subunit 5 180 242 - -
Spst9g01303 342 Gene3D - 181 242 - -
Spst9g01303 342 SUPERFAMILY post-AAA+ oligomerization domain-like 243 333 IPR008921 GO:0003677|GO:0006260
Spst9g01303 342 SMART AAA_5 70 197 IPR003593 GO:0016887
Spst9g01303 342 MobiDBLite consensus disorder prediction 1 28 - -
Spst9g01303 342 FunFam Replication factor C subunit 5 243 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01303 Spst-Chr9 12573307 12584564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01303 3 341 Core DNA Replication Machinery Family AT1G77470 69.945 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01303 K10756 - gmx:100782652 572.392