Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01291 ATGGCGCAAGCTCCTGCGGAAGACCATTTTTTCAACACGGCGTTGTACGTTGGGGATCTTGACAGCAGCGTCACCGAAGATCAGCCCTATGATCACTTCAACGTGGTTGCCCAAGTTGTTTCCATTAGAATTTGCAGGGACTCTTTAACTCAGAAATCCCTCGGTTACGGCTACGTCAATTTCAGTAACGTTCAGGATGCCGCAAAAGCATTGAATGAGCTAAATTTCAGTGTGTTGAAAGGTAAACCCATTAGGGTAATGTACTCTAATCGGGACCCTACTCTTCGTTGGACTGGTGCGGCTAACCTTCTTATAAAGAATTTGGATAAGTCAATCGATCACAAGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCTATCTTGCAAGGTTGCCAGGGATGCTTCTGGCGTGTCTAAAGGTCATGCTTTTGTGCAGTTTGATAACGAAGACTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCTTTCATGCGAAAGAAGGATAGAGAGGTTGTTCCTAGTGGTGACGCAAACTTTAGTAATGTTTATGTAAAAAACCTGTCGCATAAAATAATGGATGCTGAGTTGGGGACAATTTTTGGAGAATATGGACCCATTACTAGTGCTGCAGTGATGAAAGATGCAGAAGGTAGATCAAAAGGTTTTGGTTTTGTCAATTTCACAAATGTTGTTGCTGCTGCTAGAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGGTATGCAGTGGTATGTTGGAAAAGCCCAGAGAAAAACTGAAAGGGAGCTTGAGCTGAAAGAGCGTCATGAGCAGAATTGGAAGCCTCAACCTTATAAGCAAGGTACAAACTTGTATATCAAGAACTTGGACAGTAGTATTGGGGATGAAGAACTCAAGGAAATTTTCTCTGGGTTTGGTACAATAACCTCATCCAAGATTATGCGAGATCCAAATGGAGTGAATAAAGGATATGGATTTGTTGCATATACAAATCCGGAGGACGCAAATCGGGCTCTTGCATCGATGAATGGTCAAATGATTGCTGGCAAACCTCTCTATGTTTCCCTTGCAGAGAAAAAGGAAGATAGAAGAGCAAGGTTAAAGGTACAATTTTCACAAATGAGGATTGCTGAGATGAGACCACAATTTTCGCTAGGTGCACCACCTCGAATTCTAACGTACCCTATGAGGCCTCCTGAGATGACACCACAATTATTGTATGGGCAAACACATCGAGCAATCATAACTCAAATTGCATTTGGTTTCCAGCAACAGTTTTTTGGTGGAGGGACGGGTCCAGCGCCAGTCTTCTATCCAGTTCTTCTGCCGCCGCCCAGAGGACCCCAAGAAGCAGGTCCTATGCGATTGCCAATTTTACCCCAACAGGCCCTGGCAGCAGCCGTTGCCAATGCTACTACTCCTGATCAGCAGAGGATTGTAAGACCTGTTTCTGGCCTGCTTGGGGAAACTTTATTCCCGTTAGTAGAAAAGCTGGTGCGTGATGCAGCACCAAAGGTTACTGGTATGCTTTTGGAGATGGACCATGCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTAGACACAAAAGTTACTGACGCCATGTATTTGTTGAGAAAATTTGAAGAGATCAAACAATCGATCGACCAAGTGACTGTCTCTGAAGGACAATCCACA 1719 0.4392 MAQAPAEDHFFNTALYVGDLDSSVTEDQPYDHFNVVAQVVSIRICRDSLTQKSLGYGYVNFSNVQDAAKALNELNFSVLKGKPIRVMYSNRDPTLRWTGAANLLIKNLDKSIDHKDLFDVFATFGNILSCKVARDASGVSKGHAFVQFDNEDSAKEATDRLNGMLLNDKKVYVGPFMRKKDREVVPSGDANFSNVYVKNLSHKIMDAELGTIFGEYGPITSAAVMKDAEGRSKGFGFVNFTNVVAAARARDALDGKTFDGMQWYVGKAQRKTERELELKERHEQNWKPQPYKQGTNLYIKNLDSSIGDEELKEIFSGFGTITSSKIMRDPNGVNKGYGFVAYTNPEDANRALASMNGQMIAGKPLYVSLAEKKEDRRARLKVQFSQMRIAEMRPQFSLGAPPRILTYPMRPPEMTPQLLYGQTHRAIITQIAFGFQQQFFGGGTGPAPVFYPVLLPPPRGPQEAGPMRLPILPQQALAAAVANATTPDQQRIVRPVSGLLGETLFPLVEKLVRDAAPKVTGMLLEMDHAEVLHLIESPDALDTKVTDAMYLLRKFEEIKQSIDQVTVSEGQST 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01291 573 PANTHER RNA BINDING PROTEIN 283 410 - -
Spst9g01291 573 SUPERFAMILY RNA-binding domain, RBD 13 181 IPR035979 GO:0003676
Spst9g01291 573 ProSiteProfiles Forkhead-associated (FHA) domain profile. 122 171 IPR000253 GO:0005515
Spst9g01291 573 Gene3D - 101 174 IPR012677 -
Spst9g01291 573 Gene3D - 183 273 IPR012677 -
Spst9g01291 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 263 IPR000504 GO:0003723
Spst9g01291 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Spst9g01291 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Spst9g01291 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Spst9g01291 573 Gene3D - 471 557 - -
Spst9g01291 573 Gene3D - 274 381 IPR012677 -
Spst9g01291 573 FunFam Poly(A) binding protein cytoplasmic 1 like 289 376 - -
Spst9g01291 573 SMART poly_2 486 555 IPR002004 GO:0003723
Spst9g01291 573 Gene3D - 3 100 IPR012677 -
Spst9g01291 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Spst9g01291 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Spst9g01291 573 Pfam Poly-adenylate binding protein, unique domain 499 552 IPR002004 GO:0003723
Spst9g01291 573 SMART rrm1_1 102 174 IPR000504 GO:0003723
Spst9g01291 573 SMART rrm1_1 194 266 IPR000504 GO:0003723
Spst9g01291 573 SMART rrm1_1 296 368 IPR000504 GO:0003723
Spst9g01291 573 SMART rrm1_1 14 87 IPR000504 GO:0003723
Spst9g01291 573 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 480 557 IPR002004 GO:0003723
Spst9g01291 573 SUPERFAMILY PABC (PABP) domain 435 562 IPR036053 GO:0003723
Spst9g01291 573 SUPERFAMILY RNA-binding domain, RBD 193 375 IPR035979 GO:0003676
Spst9g01291 573 CDD RRM4_I_PABPs 294 372 - -
Spst9g01291 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Spst9g01291 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Spst9g01291 573 FunFam Polyadenylate-binding protein 95 182 - -
Spst9g01291 573 SMART rrm2_1 102 174 IPR003954 GO:0003676
Spst9g01291 573 SMART rrm2_1 296 368 IPR003954 GO:0003676
Spst9g01291 573 SMART rrm2_1 14 87 IPR003954 GO:0003676
Spst9g01291 573 SMART rrm2_1 194 266 IPR003954 GO:0003676
Spst9g01291 573 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 14 438 IPR006515 GO:0003723
Spst9g01291 573 CDD RRM2_I_PABPs 99 175 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01291 Spst-Chr9 12458249 12461097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01291 6 91 Eukaryotic Initiation Factors Gene Family AT4G34110 30.233 1.49e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01291 K13126 - gmx:100778879 575.089