Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01274 ATGCACGTCCAACATCAATCTTACGCTCAGATTCCAATCATATCAAAGTCTCAAATGCAAGGAAGCATGGCCCTAGACCGTAGGGTGGGTGTGAGGTCATTGGAAAGTGGTATTTGTGCCAACCGCCAAGCAATGGGCATGCAATCTAACTGGCCCTACAAATTACAAATCTCTCTGCCTGCATTATTTAGTAGTACTGTCCTTTACATGGTTGTCTTGGTCTGTCAAAAGGGTACGGATGGTCCTATAGTTGGTACGGGCCAAGGGAAAAAGCAGTGCAAAAGTCAAGTTATGCAGGCGTTAGCAATAGCAACCAAAGTAAGCATGGTTATAATACCGTTGAGGAGTGAAGCTGAGTACAGAGAAGCAACAGCTGTTCGATTGCATATGCAAATGGCTTCACTGTTGAACTGCGCGTCGAGTGTTCCATCTACCATGGTTAAGTCAGAGCACAAGATCAAAACTGAACCATCATCGAAGGCAATGCCGTCTATATCATTGTCATCAGCATCAGCACCAGCACCAGCATCGGATAGCAAGAAGAGGAAGTACAAGGGAGTTAGAATGAGGAGCTGGGGGTCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAGGCTGCAGCTAGAGCTTATGATGCTGCACTTCTATGCCTCAAAGGCTCCTCAGCAAATCTTAATTTCCCTTTAAGCTCTTCACAATATATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATTCAAAGAGTTGCTGCAGCCGCTGCCAATAGTTTTGACAGGGCCACTATTCCCCCTTCTGCGTCTCCAGCCTCAACCTCATCATCATCATTGGTCTCATCCCCCTCAATGGCCTCCTCTCCTTCGGATCAAGTTGATGACGATGTCTCACTGATATCGTCTTTGGAAGCCTACACTAGTTGTGATCAAGCAAATGAATCAATGGCTATGAATGTGATGGAACCTTGGTACACTTTTGGTGATATCCAATCCCCCAAGTATGTTGATCAGATGTTAAGTGGTGCTTTCTTTGATGTTGATTCGTCCCATCTGCTTGATGATCTATACGAAGAAAGCGACATTCGGTTGTGGAGCTTCTGCTGA 1134 0.4541 MHVQHQSYAQIPIISKSQMQGSMALDRRVGVRSLESGICANRQAMGMQSNWPYKLQISLPALFSSTVLYMVVLVCQKGTDGPIVGTGQGKKQCKSQVMQALAIATKVSMVIIPLRSEAEYREATAVRLHMQMASLLNCASSVPSTMVKSEHKIKTEPSSKAMPSISLSSASAPAPASDSKKRKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLSSSQYIPGDAVMSPKSIQRVAAAAANSFDRATIPPSASPASTSSSSLVSSPSMASSPSDQVDDDVSLISSLEAYTSCDQANESMAMNVMEPWYTFGDIQSPKYVDQMLSGAFFDVDSSHLLDDLYEESDIRLWSFC 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01274 377 SMART rav1_2 183 246 IPR001471 GO:0003700|GO:0006355
Spst9g01274 377 MobiDBLite consensus disorder prediction 148 183 - -
Spst9g01274 377 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 166 313 - -
Spst9g01274 377 CDD AP2 183 242 IPR001471 GO:0003700|GO:0006355
Spst9g01274 377 Pfam AP2 domain 183 232 IPR001471 GO:0003700|GO:0006355
Spst9g01274 377 MobiDBLite consensus disorder prediction 274 303 - -
Spst9g01274 377 FunFam ethylene-responsive transcription factor ERF014-like 182 242 - -
Spst9g01274 377 SUPERFAMILY DNA-binding domain 183 242 IPR016177 GO:0003677
Spst9g01274 377 MobiDBLite consensus disorder prediction 159 175 - -
Spst9g01274 377 Gene3D AP2/ERF domain 182 242 IPR036955 GO:0003700|GO:0006355
Spst9g01274 377 ProSiteProfiles AP2/ERF domain profile. 183 240 IPR001471 GO:0003700|GO:0006355
Spst9g01274 377 PRINTS Ethylene responsive element binding protein signature 184 195 IPR001471 GO:0003700|GO:0006355
Spst9g01274 377 PRINTS Ethylene responsive element binding protein signature 206 222 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01274 Spst-Chr9 12143307 12149339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01274 146 376 AP2-EREBP Transcription Factor Family AT1G21910 46.988 1.85e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst9g01274 AP2 8.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01274 - - pvu:PHAVU_009G123300g 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01274 9 12143307 12149339 Spst9g01274 9 12143307 12149339 ECH