Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01272 ATGTCATTGAGTCCTCCGAGAGAGAGATACAACGGGCATGCCCAAAGGCGAGCGAGGCTAACGTTCCAGATGTACTGGTGCTTCCAGTGCAGGCGCATGGTCCGCATCGCAGTGGATAATAACCCCTCAGAGGTCACGTGTCCCCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTGGTTGATTTTACCACCCCAGACCCCTCCCCAGAAGCCCGTTTGCTCGAAGCGCTTTCAATCATGATGGACCCACCCATCCGCCGCTTCCCGGATCTCATCCAACCCGAACCCCAAGAGGTCCCCGTGCACCACCGCCGCAGCCGCCCTCGACGACGCCAACCCGAACCCGTCCCTGAACCCCACCACCACCGCCCTCGCACTTGGATCGTCTTCCATCCTATGGACCCACCCAACCCTTTCCAGCCCATTAACAACATTCATAACCACCCCGGCCCAGGCCCATTCCCACTCCCGCGCACCGTGGACGCGCGCGACTATTTCTTCGGGCCCGGATTCAACCAACTTATAGAACAGATAACTGAAAACGACAGACCGGGTCCCGCTCCAGCGCCGGAGAGGGCTATCGAAGCGATTCCGACGGTGAAAATCGCGAGCGCGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAGGATTTCGAAGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACATATATATCACTCTGATTGCATTATTCCGTGGCTGAGGCTTCACAATTCTTGTCCTGTGTGCCGTCACGAGATGCCTGTGCCGTCGTCGTCTTCGGAGGACGACGAATGCGTTGATGTTAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGCTTTGGCCTTTCAATTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGTGAATCATGCTTAATTTAA 990 0.5576 MSLSPPRERYNGHAQRRARLTFQMYWCFQCRRMVRIAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSIMMDPPIRRFPDLIQPEPQEVPVHHRRSRPRRRQPEPVPEPHHHRPRTWIVFHPMDPPNPFQPINNIHNHPGPGPFPLPRTVDARDYFFGPGFNQLIEQITENDRPGPAPAPERAIEAIPTVKIASAHLKENSQCPVCQEDFEVGGEARELACKHIYHSDCIIPWLRLHNSCPVCRHEMPVPSSSSEDDECVDVSGDEGRLRRCLRWTRRFTSLWPFNSRYRRVHPQGNNNVAAASSRGESCLI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01272 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 267 IPR013083 -
Spst9g01272 329 SMART ring_2 220 260 IPR001841 -
Spst9g01272 329 MobiDBLite consensus disorder prediction 96 130 - -
Spst9g01272 329 FunFam E3 ubiquitin-protein ligase RING1-like 183 267 - -
Spst9g01272 329 Pfam zinc-ribbon 23 57 IPR039525 GO:0061630
Spst9g01272 329 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Spst9g01272 329 Pfam Ring finger domain 219 261 IPR001841 -
Spst9g01272 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 265 - -
Spst9g01272 329 SUPERFAMILY RING/U-box 200 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01272 Spst-Chr9 12128608 12129597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01272 192 310 C3H Transcription Factor Family AT1G68180 43.697 5.45e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01272 K11982 - gmx:100787399 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01272 9 12128608 12129597 Spst9g01272 9 12128608 12129597 ECH