Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst9g01272 | ATGTCATTGAGTCCTCCGAGAGAGAGATACAACGGGCATGCCCAAAGGCGAGCGAGGCTAACGTTCCAGATGTACTGGTGCTTCCAGTGCAGGCGCATGGTCCGCATCGCAGTGGATAATAACCCCTCAGAGGTCACGTGTCCCCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTGGTTGATTTTACCACCCCAGACCCCTCCCCAGAAGCCCGTTTGCTCGAAGCGCTTTCAATCATGATGGACCCACCCATCCGCCGCTTCCCGGATCTCATCCAACCCGAACCCCAAGAGGTCCCCGTGCACCACCGCCGCAGCCGCCCTCGACGACGCCAACCCGAACCCGTCCCTGAACCCCACCACCACCGCCCTCGCACTTGGATCGTCTTCCATCCTATGGACCCACCCAACCCTTTCCAGCCCATTAACAACATTCATAACCACCCCGGCCCAGGCCCATTCCCACTCCCGCGCACCGTGGACGCGCGCGACTATTTCTTCGGGCCCGGATTCAACCAACTTATAGAACAGATAACTGAAAACGACAGACCGGGTCCCGCTCCAGCGCCGGAGAGGGCTATCGAAGCGATTCCGACGGTGAAAATCGCGAGCGCGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAGGATTTCGAAGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACATATATATCACTCTGATTGCATTATTCCGTGGCTGAGGCTTCACAATTCTTGTCCTGTGTGCCGTCACGAGATGCCTGTGCCGTCGTCGTCTTCGGAGGACGACGAATGCGTTGATGTTAGCGGAGATGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGCTTTGGCCTTTCAATTCAAGGTATCGACGGGTTCACCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGGTGAATCATGCTTAATTTAA | 990 | 0.5576 | MSLSPPRERYNGHAQRRARLTFQMYWCFQCRRMVRIAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSIMMDPPIRRFPDLIQPEPQEVPVHHRRSRPRRRQPEPVPEPHHHRPRTWIVFHPMDPPNPFQPINNIHNHPGPGPFPLPRTVDARDYFFGPGFNQLIEQITENDRPGPAPAPERAIEAIPTVKIASAHLKENSQCPVCQEDFEVGGEARELACKHIYHSDCIIPWLRLHNSCPVCRHEMPVPSSSSEDDECVDVSGDEGRLRRCLRWTRRFTSLWPFNSRYRRVHPQGNNNVAAASSRGESCLI | 329 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst9g01272 | 329 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 267 | IPR013083 | - | |
Spst9g01272 | 329 | SMART | ring_2 | 220 | 260 | IPR001841 | - | |
Spst9g01272 | 329 | MobiDBLite | consensus disorder prediction | 96 | 130 | - | - | |
Spst9g01272 | 329 | FunFam | E3 ubiquitin-protein ligase RING1-like | 183 | 267 | - | - | |
Spst9g01272 | 329 | Pfam | zinc-ribbon | 23 | 57 | IPR039525 | GO:0061630 | |
Spst9g01272 | 329 | ProSiteProfiles | Zinc finger RING-type profile. | 220 | 261 | IPR001841 | - | |
Spst9g01272 | 329 | Pfam | Ring finger domain | 219 | 261 | IPR001841 | - | |
Spst9g01272 | 329 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 118 | 265 | - | - | |
Spst9g01272 | 329 | SUPERFAMILY | RING/U-box | 200 | 267 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst9g01272 | Spst-Chr9 | 12128608 | 12129597 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst9g01272 | 192 | 310 | C3H Transcription Factor Family | AT1G68180 | 43.697 | 5.45e-27 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst9g01272 | K11982 | - | gmx:100787399 | 420.624 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst9g01272 | 9 | 12128608 | 12129597 | Spst9g01272 | 9 | 12128608 | 12129597 | ECH |