Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01262 ATGGCCGACAATCGGAGATCCAAGGGCACCGTTAAGTGGTTCAACGATCAGAAGGGTTTCGGATTCATAACACCCGAAGATGGCGGAGAAGACCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTTCCGCTCCTTGTCCGAGGGTCAGTCCGTCGAGTTCCTCATCGATTACGGCGCAGACGGCCGCCCCATGGCCGTCGACATCACCTCTGCCGCCGTTAGATCTCGCAGTCTAGGCGGATTTCGCGGAGGGGGCGGGAGAGGAAGAGGACGCTACGGCGGCGGGGAAGGCCGTGGCGGAGGGATCGGACGGAGAGGGGGAGGAGGTTACGGGGGTGGTGGAGGAGGAGGACCTGGCTGTTATAATTGTGGAAGAATAGGTCATTTGGCGAGGGATTGTTACCAGGGACAGGGCGGTGGGGGTGGTAGTGGTGGGGGAGGTGGTGATGGTAGGATACGGAAACGCGGTGGTGGAGGGGGCGGGGTTGGGGGGGTGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTTATAACTGTGGGGAGGAAGGGCATTTTGCGAGGGAATGTCCAAACGTTGGGAAATGAAAAATTACCATTGGCATTTGTTCCAAATATGTTTTGCAGTAATTCAGCAACATATTGCATTCGCCTCTTTGCTTTGTCCTCGAACTACCTGTATTTGCATGACAACCCTGCCATTCTGATCAGTCTGAAGCAAATGTCAGAGTCTCACTGA 744 0.5632 MADNRRSKGTVKWFNDQKGFGFITPEDGGEDLFVHFTSIRSDGFRSLSEGQSVEFLIDYGADGRPMAVDITSAAVRSRSLGGFRGGGGRGRGRYGGGEGRGGGIGRRGGGGYGGGGGGGPGCYNCGRIGHLARDCYQGQGGGGGSGGGGGDGRIRKRGGGGGGVGGVVAEEEEEEEEGVITVGRKGILRGNVQTLGNEKLPLAFVPNMFCSNSATYCIRLFALSSNYLYLHDNPAILISLKQMSESH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01262 247 SUPERFAMILY Nucleic acid-binding proteins 6 71 IPR012340 -
Spst9g01262 247 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Spst9g01262 247 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Spst9g01262 247 Pfam Zinc knuckle 121 135 IPR001878 GO:0003676|GO:0008270
Spst9g01262 247 MobiDBLite consensus disorder prediction 140 172 - -
Spst9g01262 247 Gene3D - 1 71 IPR012340 -
Spst9g01262 247 ProSiteProfiles Zinc finger CCHC-type profile. 122 135 IPR001878 GO:0003676|GO:0008270
Spst9g01262 247 FunFam Cold shock protein CspC 6 73 - -
Spst9g01262 247 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
Spst9g01262 247 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Spst9g01262 247 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Spst9g01262 247 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Spst9g01262 247 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Spst9g01262 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 167 - -
Spst9g01262 247 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Spst9g01262 247 MobiDBLite consensus disorder prediction 85 105 - -
Spst9g01262 247 SMART csp_8 8 73 IPR011129 GO:0003676
Spst9g01262 247 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Spst9g01262 247 Gene3D - 97 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01262 Spst-Chr9 11974778 11975736 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Spst9g01262 CSD 3.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01262 - - gmx:100815731 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01262 9 11974778 11975736 Spst9g01262 9 11974778 11975736 ECH