LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01246	ATGGCGCAAACGCTGGCAATGCCCGTGGCACCCTCACTCGCTATCATCTCCAATACTCGCCTATCCAACACAGTCTCCGTTACCGTTCCGAACCCTCATATTCCCAAGGTTCACGGGTTAAGCATCAAGTGCGCTCGTGTTGGCGGGGTGGAGATTCCAAACAACAAGCGGATCGAGTACTCGCTGCAGTACATTCATGGAGTTGGGAGGAATAGAGCGCGACAGATCCTGTATGACATAAACATGGATAATAAAATGACGAAGGAGCTCAGTGAGGAGGAGCTCATCACTCTCAGGGACGAAGTCTCCAAATACATGATTGAAGGGGACTTGAGACGGTTCAATGCGATTAATATAAAGAGACTGAAGGACATTCAGTGCTACAGAGGAATAAGGCACATTCAGGGGCTTCCTTGCAGAGGCCAGCGAACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCTGGCAAAAAGAAAAAGTAA	495	0.4869	MAQTLAMPVAPSLAIISNTRLSNTVSVTVPNPHIPKVHGLSIKCARVGGVEIPNNKRIEYSLQYIHGVGRNRARQILYDINMDNKMTKELSEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK	164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01246	164	FunFam	30S ribosomal protein S13	37	113	-	-
	Spst9g01246	164	SUPERFAMILY	S13-like H2TH domain	45	156	IPR010979	GO:0003676
	Spst9g01246	164	Hamap	30S ribosomal protein S13 [rpsM].	44	160	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Spst9g01246	164	FunFam	30S ribosomal protein S13	114	163	-	-
	Spst9g01246	164	NCBIfam	30S ribosomal protein S13	46	155	IPR019980	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Spst9g01246	164	Gene3D	30s ribosomal protein s13, domain 2	114	164	IPR027437	-
	Spst9g01246	164	Gene3D	-	45	113	-	-
	Spst9g01246	164	ProSiteProfiles	Ribosomal protein S13 family profile.	47	153	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Spst9g01246	164	Pfam	Ribosomal protein S13/S18	46	150	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Spst9g01246	164	ProSitePatterns	Ribosomal protein S13 signature.	129	142	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Spst9g01246	164	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	36	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01246	Spst-Chr9	11840983	11841629	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01246	46	162	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	30.496	6.87e-07	45.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01246	K02952		-	gmx:100500355	264.618

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g01246	9	11840983	11841629	Spst9g01246	9	11840983	11841629	ECH