Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01238 ATGACTGAGAGTCGATGTCAGCCGTTGAAGGACATGGCGGTCGGAGGGGATGCTGCTGCCATGGGGGGACCCTATCAGTCTGATTTTGTGGCCAAAATTTATCGTGACTCTGCCGGACGCGAAATTGATTACTTGTCCCAGGCTAGGAAAGCGCTGGCTGAACGTTCCCCTTTTGATGTTGCTGATGAAACTTCGACTTCCACTGCGCTTACACTGCCCAGTGGGTTGGCTGGTTTGCTGAACCGGCAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCAGGTGGGCATAAGAGAAAGTCTTCCACTAGGGCAAACCAGAAGAAGCCCGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGGGACTTAACCTTGGCTGATATTGACACCTTGTTTGAGTTCTCTCGCACTTCTAGTTTAGCTTCTCAGGACTGGTTCTCCATTCCGCAAGTGGGAAATGCTCCCAGGTACAATGCAGTTACTAGTAGTAGGGAGATTGAGATGGAGCCTGTTCCAAAATTCAATATAGGAGTCAGTAGTGAGGATGAAAAGAAGGTTGGTGAAACTGTGGAAAATGAGGATGAATTGTTGTTAATTGAGACAATTGAAGATGTTGATGTTGAACAAACTTGTTCTCAGGATGACAAGAATCAAGACATTTCGGATTCTGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAACTTTCTCTGGCTTCTGAGCGACCCTCTAAGAAAAGGAGACTTTTGGGTGTTGGAGCTGGATTAGAGAAAGTTATAATGACTAGTCCTTGTGATGATGATCAACCGTTTTGCCATTATTGTGGCCGGAGAGACACTGGCAGAGTCCCCAATAGGTTAATTATCTGCACATCTTGTAAAATGGTGGTTCACCGGAAGTGCTATGGTGTTCATGATGATGTAGATGAGGCTTGGCTGTGCACTTGGTGCAAGCAAATGGGTGATGTTGATGAATCAGTGAATCCCTGTGTTCTTTGCCCAAAGAAGGGTGGGGCATTAAAACCAGTTAATAGCAGTGAGGAAGGTGCTGGTTCTGTCCAGTTTGTGCACCTATTTTGCTCTCTGTGGATGCCTGAGGTTTATGTAGATGATTTGAAGAAAATGGAACCTGTTATGAATGTGGGGGAAATCAAGGAAACCCGGAAAAAAATAGTTTGTAGTGTTTGCAAAACAAAGAGTGGTGCATGTGTTCGGTGTAGCCATGGTATGTTTCATTGGCATGCCATAGACCCCTCTTGGGCAACTCGACCTGTTTCCATCCCTATTCTCATGGAAGCTGCAGAACATCTTTCCACCCTTCATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTTGAGTTGCGAGCTTTTTGCTTGAAACACTCAGATCTACCAGAGAACAGAAGCGTCTTGCCACAGGAAGGCTCTATTGAGGTTAGAAATGAACTTTCAGAAGCCAATAGCCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGCCTCTGATAGTAATCCAGACAAATTGAACCATAATGATGAACCACTAGATGGAGTATTACCTGATTGCAGGTTAAGTGCTCATATGCTGGGATGTGGTGCTACCCCCCAACAAAATATTGAAGTGGTAGGGAGAGTGACGGAGAATGTTGATGCATCTGATTCTCTCAGTTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTCAAAGATGTAGCATTGGAGATTGGCATTTCACCAGATACTTTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCGGCACAAAATAGTGAATTGGCTAAAAGCCCATGTATATACTAGTGCATTTCAGAAGGGTTTAAAGGTTAAATTCAAACCAGCTAATGCATCCAAAAATGATAGTGGAGCCACAGATGGCTCTGATACTTTATCAATATCAGACTCGGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGAAGAACAACCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAGGGGGTTACAAGTGAGAATGGGATGACGGTGCACATGTGCAGAGTAGGCCAGTCCAACTGTGACAATCCAACAAGTTCCAATGAAGCATCCATTCAAAATGCATCTGAAATGATGTGTTGCCAGAACACAGACAAGTCTGAGGATATTTTTCCTGAAGTTCAAGGCAATGCTGATAAACCTTACAGATCCTGCGTAACTGGGTACAATACAGAAGACAAGTCTACTACATGTTTGCAAAATCCTACTACACATTCATATCAGCACTGTCTTGTTCATTCTGCTTCAGAACCATCTGATTCTGGTTTCATAAAGGGTGCAGTTTCTAGTTATATTCATCCATTCATCAACAAGAAATTGCTGCAGATTCGTGATGGGCTTCCCTCAGAGGATGTTATATGTTCAGGTGATAACAGAAATTCGAATTTGCTTGAATCCTTTGGGGCTAGTGGCTGCTCAAACAGCCAAAATCAGAAGTTAACTTGCAGTGACATGTCAAAGCCTTACGAGAGGGAACAATTGGTTAGGACTAAAAAAATGGAACTGTTGGATTTTCCCCCGCAGGATGAACTGGAGGGGGAACTTGTTTATTTTCAATATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCATATTGATAATTTAATCTACAGTGTTGCCAAGAGTTTACCGCAAGAGATTGATAAGACACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAGGCACAGGCCGTATTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTACTAGGGCATTCCGAAAAGACTCCTTAGATGATTCTATGCAACAGGAGAATTTGTTAAAATTGGACACTTTAAATGGAAGGACAGGTGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCTAGAGTAGCTGTGACTAGAACTTCATCAGAGAAATATTCAGATTTTTGCATGCCAATCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAAACTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTATTAGTGCACTTAGATTGCTATCGTAGTGTGAAAGAAACAACAGGTCCGTGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAACTCTGGAGCATCTGCTATCAATTTTTGGGAGAAGCCTAATATTGGAGCAGAATGTGCTCTCTGTGGTGCTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCAATGGGTTCATGCTTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAACTAGATGCAGTTGAAGGATTGGAAACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAAGCATGGTGTATGCATGAAGTGTTGTTATGGCCATTGCCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGAACTGCTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAGCACAGTTTGGAGCAAAAAACAAAGGCTGAAAATCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTCTGTGAAAGAATTGTTAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATTCTCGCCTTTAAAAGAGATAATGTTGCTAGGTCTGTCCTGGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCAGAATCAGCTACAACGTCCCTGAAAGGGAACACAGAGGGATACAGATCGTGCAGTGAACCACTCCAAAGATCGGATGATGTTACTGTTGACAGTTCTGTTTCTGCTAAGCACCGTGTCAGAGTCGCCATATCTATGGACACAGACCCAAAATTAGATGATGACTGCTCAACCTCCCAAAGCAAATATAACCACAATATTCCAGAAAGAACTCAATTTTCTGGCAAGAAGATTCCTCAGAGAGCTGCTGCATCACGAAATATTTCAGATGAAGGTGGATGGAGGTCTAAATCTAGAAAGCATGCTGAAACATTTGGAAAGGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCGAAAGGATATGCATATGTTCCTGCTGATTGCCTGTCAAATGACAAGCACTCTAACGAGGATGTATATGCTAGTGGGCCAGTGGAGCATGACAGGTAG 4377 0.4259 MTESRCQPLKDMAVGGDAAAMGGPYQSDFVAKIYRDSAGREIDYLSQARKALAERSPFDVADETSTSTALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSTRANQKKPEDSNIWIETEEYFRDLTLADIDTLFEFSRTSSLASQDWFSIPQVGNAPRYNAVTSSREIEMEPVPKFNIGVSSEDEKKVGETVENEDELLLIETIEDVDVEQTCSQDDKNQDISDSVSLEWFLGCRNKLSLASERPSKKRRLLGVGAGLEKVIMTSPCDDDQPFCHYCGRRDTGRVPNRLIICTSCKMVVHRKCYGVHDDVDEAWLCTWCKQMGDVDESVNPCVLCPKKGGALKPVNSSEEGAGSVQFVHLFCSLWMPEVYVDDLKKMEPVMNVGEIKETRKKIVCSVCKTKSGACVRCSHGMFHWHAIDPSWATRPVSIPILMEAAEHLSTLHVQGKLDIGWRFGQSMVELRAFCLKHSDLPENRSVLPQEGSIEVRNELSEANSLPVTLPVSGEHNLRDCRNGGLASDSNPDKLNHNDEPLDGVLPDCRLSAHMLGCGATPQQNIEVVGRVTENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKAHVYTSAFQKGLKVKFKPANASKNDSGATDGSDTLSISDSGLLDPVAVKSVPPRRRTTSNIRILKDNKVICSSEGVTSENGMTVHMCRVGQSNCDNPTSSNEASIQNASEMMCCQNTDKSEDIFPEVQGNADKPYRSCVTGYNTEDKSTTCLQNPTTHSYQHCLVHSASEPSDSGFIKGAVSSYIHPFINKKLLQIRDGLPSEDVICSGDNRNSNLLESFGASGCSNSQNQKLTCSDMSKPYEREQLVRTKKMELLDFPPQDELEGELVYFQYRLLQNVVAKRRHIDNLIYSVAKSLPQEIDKTHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRAFRKDSLDDSMQQENLLKLDTLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPISDFSKEQCKSCDICRRSETILNPILVCSGCKVLVHLDCYRSVKETTGPWYCELCEDLSSRNSGASAINFWEKPNIGAECALCGATTGAFRKSSDGQWVHAFCAEWVFESTFKRGQLDAVEGLETVPKGVDICCICHRKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTAGGKAQHKAYCEKHSLEQKTKAENQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKHRVRVAISMDTDPKLDDDCSTSQSKYNHNIPERTQFSGKKIPQRAAASRNISDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDVYASGPVEHDR 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01238 1458 SUPERFAMILY FYVE/PHD zinc finger 265 322 IPR011011 -
Spst9g01238 1458 Pfam PHD-zinc-finger like domain 333 413 - -
Spst9g01238 1458 Pfam PHD-zinc-finger like domain 1118 1224 - -
Spst9g01238 1458 PANTHER PHD FINGER PROTEINS 91 981 - -
Spst9g01238 1458 ProSiteProfiles Zinc finger PHD-type profile. 1048 1097 IPR019787 -
Spst9g01238 1458 ProSiteProfiles Extended PHD (ePHD) domain profile. 1116 1225 IPR034732 -
Spst9g01238 1458 MobiDBLite consensus disorder prediction 72 114 - -
Spst9g01238 1458 SUPERFAMILY FYVE/PHD zinc finger 1040 1095 IPR011011 -
Spst9g01238 1458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1030 1104 IPR013083 -
Spst9g01238 1458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Spst9g01238 1458 ProSitePatterns Zinc finger PHD-type signature. 276 321 IPR019786 -
Spst9g01238 1458 ProSiteProfiles Zinc finger PHD-type profile. 273 324 IPR019787 -
Spst9g01238 1458 MobiDBLite consensus disorder prediction 1378 1404 - -
Spst9g01238 1458 Pfam PHD-finger 1062 1095 - -
Spst9g01238 1458 Pfam PHD-finger 289 321 - -
Spst9g01238 1458 MobiDBLite consensus disorder prediction 1303 1327 - -
Spst9g01238 1458 ProSiteProfiles Extended PHD (ePHD) domain profile. 331 471 IPR034732 -
Spst9g01238 1458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1226 IPR013083 -
Spst9g01238 1458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 418 IPR013083 -
Spst9g01238 1458 CDD ePHD 1119 1224 - -
Spst9g01238 1458 MobiDBLite consensus disorder prediction 87 105 - -
Spst9g01238 1458 Coils Coil 945 965 - -
Spst9g01238 1458 SMART PHD_3 1171 1225 IPR001965 -
Spst9g01238 1458 SMART PHD_3 1050 1095 IPR001965 -
Spst9g01238 1458 SMART PHD_3 275 322 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01238 Spst-Chr9 11755294 11769134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01238 270 412 C2H2 Transcription Factor Family AT3G14740 32.192 2.19e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g01238 zf-HC5HC2H_2 3.4e-22 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01238 - - vum:124846061 2277.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01238 9 11755294 11769134 Spst9g01238 9 11755294 11769134 ECH