LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01234	ATGCCTAGGCAACCGCCACCACCATTGCCGCAGCAGCCTGCTGTCATGGAGCAGGTGATATGGCAAGCTTGTGCAGGAGCTGTCGGCGAAATCCCGAAGCCAAATTCTATAGTTTACTACTTCCCTCAAGGACATTTGGATCAAGCCTCTTCGGCACCGGGAAATCTCTCCCCTTATCTTCTGAGCAGACCCTGCGTTCGCTGCAGCACCACCTCGGTTCAATTTCTCGCCGATCCTTTTACCGACGAGGTTTTCTCCAAGATGACTCTCCAACCTGTCGCTGATAACTATGTTGGGGAACCCTTACCTATTGCTGCTCCCGCTCCCCTGCGAAACGACGACAAGGAGATCGTTTCTTTCGCCAAGATTCTCACACCATCTGATGCTAACAACGGCGGGGGCTTCTCCGTGCCGAGGTTCTGCGCGGACTCCATCTTCCCGCCGCTAGACTTCCAGGCAGACCCGCCCGTGCAGAACCTTTCCGTCACTGATGTCCATGGCTTCACCTGGGAGTTCCGCCATATCTACCGTGGAACTCCGCGCCGCCACTTGCTCACCACCGGCTGGAGCACTTTTGTCAACAACAAGAAGCTTGTCGCCGGGGACTCCGTCGTGTTCATGAGAAATGCCGCAGGACGTTTGTTCGTCGGAATTCGCCGTGCCACGCGCTTCTCTCCGGGGAAGAGCTGCGGCGGAGGCGCGAAGCTCAGGTTAATTGAGGAGGAGGGGGAGGAGGAAGAAGAGGAGGAGGAGGAAGATGAAGAGAAGGCGAGGGAGGTTTTCTCGAGGGATGGGAAGGGGAAGCTGTCGGCGAAGGTGGTTGCGGAGGCGGCGGAGTTGGCAGTGCGGAACATGCCGTTTGAGGTTGTTTATTATCCCAAGGCTGGTTGCTCTGAGTTTGTCGTGAACAGTGAGGCTGTGGATGAATCCATGAGGAAACCATGGAGCGCTGGAGTGAGAGTGAAGATGTCTATGGAGACCGATGATTCGTCTAGGATGACATGGTTTCAGGGTACGGTCTCTGCTATCTCATCGCACGATAATGGCCAATGGCGCGATTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTATTGCAGAATGCAAAGTGGGTTAGCCCTTGGCAGGTGGAAATTGTTTCTACCGCACCTGCACTTCATTCAGAATTTCCCCTAGCAAAAAGGTTTAGAACTGCTCATGGTTCTGGGGTCTTTACTGATGGAGAGAGAGAGCCCTTTTCTATGACCAGATTCACTAATTCATCAATGGGACACATGAATCAGGCATGGTGGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTTCCAATTATCCAAGGGACATGTCTCGTCTGTGTATGGGTAATTCCTTAGGGCACAATTCATTTCCAGGGGTGAACACTTTGTCAACTGAACTAAATGTTGGCAGCTCTCCATCTGATGAATTGTCACCTGATAGTCGTAATAGTCTCCATTCCTGTGTCCTAGACCCTGTTGAGAAACACAACAGCAACTCAATAAAACCTGTGTCTAATTCATTTCAGCTATTTGGTGCAACCATTTTGAAACCTGCTCAAAATGGTTTGTCAGGTACTGGTGACACAGGAGATAAAAGCCTTGACAGATGA	1671	0.5135	MPRQPPPPLPQQPAVMEQVIWQACAGAVGEIPKPNSIVYYFPQGHLDQASSAPGNLSPYLLSRPCVRCSTTSVQFLADPFTDEVFSKMTLQPVADNYVGEPLPIAAPAPLRNDDKEIVSFAKILTPSDANNGGGFSVPRFCADSIFPPLDFQADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVVFMRNAAGRLFVGIRRATRFSPGKSCGGGAKLRLIEEEGEEEEEEEEEDEEKAREVFSRDGKGKLSAKVVAEAAELAVRNMPFEVVYYPKAGCSEFVVNSEAVDESMRKPWSAGVRVKMSMETDDSSRMTWFQGTVSAISSHDNGQWRDSPWRMLQVTWDEPEVLQNAKWVSPWQVEIVSTAPALHSEFPLAKRFRTAHGSGVFTDGEREPFSMTRFTNSSMGHMNQAWWGYNTFPAGMQGARHDVFSASSFSNYPRDMSRLCMGNSLGHNSFPGVNTLSTELNVGSSPSDELSPDSRNSLHSCVLDPVEKHNSNSIKPVSNSFQLFGATILKPAQNGLSGTGDTGDKSLDR	556

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst9g01234	556	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	18	545	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Spst9g01234	556	FunFam	Auxin response factor	118	222	-	-
Spst9g01234	556	SUPERFAMILY	DNA-binding pseudobarrel domain	114	227	IPR015300	-
Spst9g01234	556	Coils	Coil	236	260	-	-
Spst9g01234	556	MobiDBLite	consensus disorder prediction	239	261	-	-
Spst9g01234	556	ProSiteProfiles	B3 DNA-binding domain profile.	120	222	IPR003340	GO:0003677
Spst9g01234	556	SMART	B3_2	120	222	IPR003340	GO:0003677
Spst9g01234	556	MobiDBLite	consensus disorder prediction	241	255	-	-
Spst9g01234	556	Gene3D	-	117	222	IPR015300	-
Spst9g01234	556	Pfam	Auxin response factor	277	360	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01234	Spst-Chr9	11639837	11642698	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01234	16	543	B3 DNA Binding Superfamily	AT1G77850	46.630	3.13e-151	445

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Spst9g01234		B3	4.4e-22	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01234	-		-	gmx:102662128	726.857

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g01234	9	11639837	11642698	Spst9g01234	9	11639837	11642698	ECH
	Spst8g01285	8	11974592	11977520	Spst9g01234	9	11639837	11642698	PCT

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