Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01234 ATGCCTAGGCAACCGCCACCACCATTGCCGCAGCAGCCTGCTGTCATGGAGCAGGTGATATGGCAAGCTTGTGCAGGAGCTGTCGGCGAAATCCCGAAGCCAAATTCTATAGTTTACTACTTCCCTCAAGGACATTTGGATCAAGCCTCTTCGGCACCGGGAAATCTCTCCCCTTATCTTCTGAGCAGACCCTGCGTTCGCTGCAGCACCACCTCGGTTCAATTTCTCGCCGATCCTTTTACCGACGAGGTTTTCTCCAAGATGACTCTCCAACCTGTCGCTGATAACTATGTTGGGGAACCCTTACCTATTGCTGCTCCCGCTCCCCTGCGAAACGACGACAAGGAGATCGTTTCTTTCGCCAAGATTCTCACACCATCTGATGCTAACAACGGCGGGGGCTTCTCCGTGCCGAGGTTCTGCGCGGACTCCATCTTCCCGCCGCTAGACTTCCAGGCAGACCCGCCCGTGCAGAACCTTTCCGTCACTGATGTCCATGGCTTCACCTGGGAGTTCCGCCATATCTACCGTGGAACTCCGCGCCGCCACTTGCTCACCACCGGCTGGAGCACTTTTGTCAACAACAAGAAGCTTGTCGCCGGGGACTCCGTCGTGTTCATGAGAAATGCCGCAGGACGTTTGTTCGTCGGAATTCGCCGTGCCACGCGCTTCTCTCCGGGGAAGAGCTGCGGCGGAGGCGCGAAGCTCAGGTTAATTGAGGAGGAGGGGGAGGAGGAAGAAGAGGAGGAGGAGGAAGATGAAGAGAAGGCGAGGGAGGTTTTCTCGAGGGATGGGAAGGGGAAGCTGTCGGCGAAGGTGGTTGCGGAGGCGGCGGAGTTGGCAGTGCGGAACATGCCGTTTGAGGTTGTTTATTATCCCAAGGCTGGTTGCTCTGAGTTTGTCGTGAACAGTGAGGCTGTGGATGAATCCATGAGGAAACCATGGAGCGCTGGAGTGAGAGTGAAGATGTCTATGGAGACCGATGATTCGTCTAGGATGACATGGTTTCAGGGTACGGTCTCTGCTATCTCATCGCACGATAATGGCCAATGGCGCGATTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTATTGCAGAATGCAAAGTGGGTTAGCCCTTGGCAGGTGGAAATTGTTTCTACCGCACCTGCACTTCATTCAGAATTTCCCCTAGCAAAAAGGTTTAGAACTGCTCATGGTTCTGGGGTCTTTACTGATGGAGAGAGAGAGCCCTTTTCTATGACCAGATTCACTAATTCATCAATGGGACACATGAATCAGGCATGGTGGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGTATTTTCTGCATCAAGTTTTTCCAATTATCCAAGGGACATGTCTCGTCTGTGTATGGGTAATTCCTTAGGGCACAATTCATTTCCAGGGGTGAACACTTTGTCAACTGAACTAAATGTTGGCAGCTCTCCATCTGATGAATTGTCACCTGATAGTCGTAATAGTCTCCATTCCTGTGTCCTAGACCCTGTTGAGAAACACAACAGCAACTCAATAAAACCTGTGTCTAATTCATTTCAGCTATTTGGTGCAACCATTTTGAAACCTGCTCAAAATGGTTTGTCAGGTACTGGTGACACAGGAGATAAAAGCCTTGACAGATGA 1671 0.5135 MPRQPPPPLPQQPAVMEQVIWQACAGAVGEIPKPNSIVYYFPQGHLDQASSAPGNLSPYLLSRPCVRCSTTSVQFLADPFTDEVFSKMTLQPVADNYVGEPLPIAAPAPLRNDDKEIVSFAKILTPSDANNGGGFSVPRFCADSIFPPLDFQADPPVQNLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVVFMRNAAGRLFVGIRRATRFSPGKSCGGGAKLRLIEEEGEEEEEEEEEDEEKAREVFSRDGKGKLSAKVVAEAAELAVRNMPFEVVYYPKAGCSEFVVNSEAVDESMRKPWSAGVRVKMSMETDDSSRMTWFQGTVSAISSHDNGQWRDSPWRMLQVTWDEPEVLQNAKWVSPWQVEIVSTAPALHSEFPLAKRFRTAHGSGVFTDGEREPFSMTRFTNSSMGHMNQAWWGYNTFPAGMQGARHDVFSASSFSNYPRDMSRLCMGNSLGHNSFPGVNTLSTELNVGSSPSDELSPDSRNSLHSCVLDPVEKHNSNSIKPVSNSFQLFGATILKPAQNGLSGTGDTGDKSLDR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01234 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst9g01234 556 FunFam Auxin response factor 118 222 - -
Spst9g01234 556 SUPERFAMILY DNA-binding pseudobarrel domain 114 227 IPR015300 -
Spst9g01234 556 Coils Coil 236 260 - -
Spst9g01234 556 MobiDBLite consensus disorder prediction 239 261 - -
Spst9g01234 556 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Spst9g01234 556 SMART B3_2 120 222 IPR003340 GO:0003677
Spst9g01234 556 MobiDBLite consensus disorder prediction 241 255 - -
Spst9g01234 556 Gene3D - 117 222 IPR015300 -
Spst9g01234 556 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst9g01234 556 Gene3D - 315 388 - -
Spst9g01234 556 CDD B3_DNA 119 220 IPR003340 GO:0003677
Spst9g01234 556 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01234 Spst-Chr9 11639837 11642698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01234 16 543 B3 DNA Binding Superfamily AT1G77850 46.630 3.13e-151 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst9g01234 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01234 - - gmx:102662128 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01234 9 11639837 11642698 Spst9g01234 9 11639837 11642698 ECH
Spst8g01285 8 11974592 11977520 Spst9g01234 9 11639837 11642698 PCT