Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01224 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGTGACAGCTTTAAAGTTGATGGTGGCCTAAATTCAATTGCTTCCCCAATGTTAATGGTTGACACTACTGTGGAGAACAAGTCCGAATATATTCCTCAAGAATCAAGAGAGGTTTCTGGAGCCGATCAAGAGACCACAAATAAAGATGTTATTAAGATGAGAAGACGTCTAGCACAGAATAGAGAGGCTGCTCGGAAAAGTAGGCTAAGGAAAAAGGCGTATGTAAAACAATTGGAATCAAGCCGTACGAAGCTCCTGCAACTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGAGTCTGTACATGGGGACTGCATTAGATGGCAGCTATATAGGATCAACATCAGAAACAATCAACCCAGGGATTGTTGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAATGAAGAGCTGAGACATGCCTTTCAAACGCAAGCACCTGATGTTCAGCTCAATGTAGTGATTCAGAGTGTCTTAAACCATTACTCAAATCTCTTCAGAATGAAAGCAGATGCTGCAAAAGCTGATGTTCTTTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATCTTCCTTTGGATTGGAGGGTCCCGTCCATCACAGCTTCTAAACATCATCGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGTTGGTATTGAAAAACTCTGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAGGGATTGGAAAAACTTCAGCAGAGTTTGGTCCATGACATGGCAGTTGATCCATCCGGTGTAGGAAACTTTGGACTTCAGATGGCTCTTGCTATGGACAAATTTGAGGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGACAAGAAACTCTGCTTCACATGTCACGCATCCTCTCAACTCACCAAGCTGCTCGTGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCACTCTTTGCTCTCTTTGGTCTTCTCGTCCATGTGAACTTGCCTAG 1059 0.4391 MKMDIYEPFQQVGMWGDSFKVDGGLNSIASPMLMVDTTVENKSEYIPQESREVSGADQETTNKDVIKMRRRLAQNREAARKSRLRKKAYVKQLESSRTKLLQLELEIGKARKQSLYMGTALDGSYIGSTSETINPGIVAFEIEYGQWVEEQQRRNEELRHAFQTQAPDVQLNVVIQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVGIEKLCLSSQQAEDALSQGLEKLQQSLVHDMAVDPSGVGNFGLQMALAMDKFEALEGFVNQADHLRQETLLHMSRILSTHQAARGLLALGEYFHRLRTLCSLWSSRPCELA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01224 352 Pfam bZIP transcription factor 66 100 IPR004827 GO:0003700|GO:0006355
Spst9g01224 352 Gene3D - 67 117 - -
Spst9g01224 352 Coils Coil 86 113 - -
Spst9g01224 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 100 IPR004827 GO:0003700|GO:0006355
Spst9g01224 352 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Spst9g01224 352 FunFam BZIP family transcription factor 66 115 - -
Spst9g01224 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Spst9g01224 352 PANTHER TRANSCRIPTION FACTOR TGA9 3 350 - -
Spst9g01224 352 ProSiteProfiles DOG1 domain profile. 137 347 IPR025422 GO:0006351|GO:0043565
Spst9g01224 352 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Spst9g01224 352 SUPERFAMILY Leucine zipper domain 67 101 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01224 Spst-Chr9 11592400 11595328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01224 3 350 Calmodulin-binding Proteins AT1G22070 54.247 1.74e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst9g01224 DOG1 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01224 K14431 - gmx:100794268 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01224 9 11592400 11595328 Spst9g01224 9 11592400 11595328 ECH
Spst8g01281 8 11927665 11938168 Spst9g01224 9 11592400 11595328 PCT