Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01193 ATGGCCACTATGATGGATTTTTACAGCAACACAGAGTTTCAACTTCACTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCCTCTTTTTCTTCTTCACCTTCGGACTCCTCTTTCCCTTCTACTTCTTACTCTCCTTCTCCCAACTACCTTCCTTTCTCACCTTCCCTCCCTAACTTTTACTCAAACAACTGCTCTACATCGATGACCCGCGTATTTGCCGACGGGTTGTCCTTATCCAACACCCAAAACATCATAGGCTTCGGGCAGGGGCAACCAACGTCTCTTCTCGGCCTAAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCCCAAATCCAGATCCAAAGCCAGCAGCAGCAGAATCACAACACCCTTAGCTTTCTCGGGCCCAAGCCCATCCCCATGAAGCACGTGGGCATGCCTCCGAAGCACACGAAGCTGTACCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTTGCTGAGATCAGACTCCCCAAGAACCGGACTAGGCTCTGGCTGGGAACCTTCGACACCGCCGAAGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCTAGGCTGAACTTTCCCAACCTCCGCCACCAGGGTTCCTCCGTTGGCGGAGAATTTGGGGAGTACAAGCCGCTCCATTCCTCTGTGGACGCCAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGTCGCAGAAACAGGGAAAGACCGAGAAGCCTCAGGGTTCGTCCAAGAGGTCGCGATCTAAAGTCGCTCCTCCGCCAGAGAAGGCTGATTCCGACAAGGGTTCGGACGACTACACCAATAACAACTCTTGCAAGGTGGAAGCTTCCTCGGTCTCCGTCATAACGGAGAGCGAGGGGTCTGAAGGATCTTCGCCTCTCTCGGATCTGACATTCGCTGACATTAGCGAGCCACAGTGGAAAGGTGATTCGGATAATTTTAATCTCCAGAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.533 MATMMDFYSNTEFQLHSDPFRGELMEVLEPFMKSPSSTPSFSSSPSDSSFPSTSYSPSPNYLPFSPSLPNFYSNNCSTSMTRVFADGLSLSNTQNIIGFGQGQPTSLLGLNHLTPSQISQIQAQIQIQSQQQQNHNTLSFLGPKPIPMKHVGMPPKHTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGEFGEYKPLHSSVDAKLQAICEGLAESQKQGKTEKPQGSSKRSRSKVAPPPEKADSDKGSDDYTNNNSCKVEASSVSVITESEGSEGSSPLSDLTFADISEPQWKGDSDNFNLQKYPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01193 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Spst9g01193 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 353 - -
Spst9g01193 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Spst9g01193 353 MobiDBLite consensus disorder prediction 262 287 - -
Spst9g01193 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Spst9g01193 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Spst9g01193 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Spst9g01193 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Spst9g01193 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Spst9g01193 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Spst9g01193 353 MobiDBLite consensus disorder prediction 253 321 - -
Spst9g01193 353 MobiDBLite consensus disorder prediction 288 321 - -
Spst9g01193 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01193 Spst-Chr9 11074778 11075839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01193 1 353 AP2-EREBP Transcription Factor Family AT1G78080 52.267 6.70e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g01193 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01193 K09286 - gmx:100800478 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01193 9 11074778 11075839 Spst9g01193 9 11074778 11075839 ECH
Spst8g01251 8 11559318 11560307 Spst9g01193 9 11074778 11075839 PCT