Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01191 ATGGCTGTGCTTAGTGGGTTTTGGGGCCTGCCCCGTAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTAGCGCTTGGATTGATTCAATGAGAGCCTCTTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATCTTGGATTCTTTATCACCCTTCAGCTCTGAACACCTTTGAGCAAATAACATATAATTCCAAAGGCAAGCAAATTGTGGTTTTTCTTGACTACGATGGAACTCTCTCCCCTATTGTTGCAGATCCGGATAAAGCTTTCATGACTGAAAAGATGAGAGCGACGCTTAAGGCCATCGCAAGACATTTTCCCACAGCTATCGTCACAGGGAGGTGCAGAGACAAGGTGTATAACTTTGTAAAATTGGCCGAACTTTACTATGCCGGAAGCCATGGCATGGACATTAAGGGGCCAACAAAAAGCCAACGTCCAAAGCAAGGTAATAATAAAGCGATACTGTTCCAAGCTGCAAGTCAATTCCTGCCCATGATCGATGAGGTGTACAAGATCTTGGTAGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTTGAGAACAACAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTTGACGAAAAGAGTTGGGCATCGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGAGTACCCACAACTTAGGCTAACTCAAGGGAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAGAATTCGAATGATGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTACGCAGTAGGGATCAAGGAATTGGGATTCTCGTTTCTAGAGTTGCAAAAGAAACTGATGCTTCCTATACCTTGCAAGATCCATCAGAGGCAAGTCCTATATATTCCATCAACCACAATTTATAA 966 0.4286 MAVLSGFWGLPRKNLVKRLEGAKVSAWIDSMRASSPTRAKSESQEKRSWILYHPSALNTFEQITYNSKGKQIVVFLDYDGTLSPIVADPDKAFMTEKMRATLKAIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSQRPKQGNNKAILFQAASQFLPMIDEVYKILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWASLAEKVRLVLNEYPQLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLRSRDQGIGILVSRVAKETDASYTLQDPSEASPIYSINHNL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01191 321 Gene3D - 154 239 - -
Spst9g01191 321 FunFam Trehalose 6-phosphate phosphatase 163 239 - -
Spst9g01191 321 NCBIfam trehalose-phosphatase 70 310 IPR003337 GO:0003824|GO:0005992
Spst9g01191 321 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 312 IPR044651 GO:0004805|GO:0005992
Spst9g01191 321 FunFam Trehalose 6-phosphate phosphatase 169 316 - -
Spst9g01191 321 Pfam Trehalose-phosphatase 75 309 IPR003337 GO:0003824|GO:0005992
Spst9g01191 321 CDD HAD_TPP 73 310 - -
Spst9g01191 321 NCBIfam HAD-IIB family hydrolase 74 282 IPR006379 -
Spst9g01191 321 FunFam Trehalose 6-phosphate phosphatase 72 158 - -
Spst9g01191 321 SUPERFAMILY HAD-like 73 311 IPR036412 -
Spst9g01191 321 Gene3D - 74 305 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01191 Spst-Chr9 11058453 11060359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01191 68 283 Trehalose Biosynthesis Gene Families AT1G70290 26.549 2.33e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01191 K01087 - gmx:100788641 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01191 9 11058453 11060359 Spst9g01191 9 11058453 11060359 ECH
Spst8g01248 8 11535694 11537893 Spst9g01191 9 11058453 11060359 PCT