Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01176 ATGAAATCCAAGAAGAGAGGACGTGAGTCTTTGGATGCCATGCAAACCATGACGAAAGAGGGAAGCAGCCTCCTCTTTGCGTGCATGGGAGGGGTTCCTCCGACAAACGTTCATTCGCCACGTGTTACTATAGCACACAATATGGGAAGATCTCCATGCTGCGACGAGAATGGCCTTAAGAAAGGACCCTGGACTCCCGAAGAAGATCAAAAGCTAGTCCAGCACATTCAGAAACATGGCCATGGAAGTTGGAGGGCTCTCCCTAAGCTAGCCGGTCTCAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACTAATTATTTAAGGCCTGATATCAAGAGGGGCAAATTTTCTCAAGAAGAGGAGCAAACGATTCTGCATCTCCATTCTATCCTTGGAAACAAATGGTCAGCTATTGCAACCCACCTTCCAGGCAGGACAGATAATGAGATCAAGAATTTCTGGAATACTCATTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACTCACCAACCTAGAACTGATCTTGTTTCTAGCTTGCCATATCTGCTGGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCATTGGATGAACATGCTATGAGGTTGCAAGCAGAGGCAGTCCAGCTGGCAAAGCTTCAATACCTTCATTATCTAATCCAATCCTCAAACTCCTTAAGCACCAACTCCTATGACCAAAAGGCCACCACAAACAACATGGAACCTTTCTCGTTGATAAACTCAATCTCCAATGTGAAAGAGAATCCAGTCATATTGCAACCAGATGCTCCTGCCTCATTTTCTCATGGCATTGCTAGTTCTCAACCACTCCACCACCCAAACGTGCTACCTCACCTTTTAGACCCACGAGTCTCTTTCAGTTCTCAATCATGTTTGAATAGTGAGATGGGTCCAGGTACTAACTTTGCAATGATCAGTCAAGGGGATCACACGGTTGATCCTGACTCGTCCTGGATTATTCCATCTATGCCTCCAAATGCAATAGGGATATTAGCTAACAATCCAGGAGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAGGACCCTCATCTTATTGGCCTGAACTATTTTTTGAGGACCCCATCATGCATGAGCTATCTTAG 1140 0.4509 MKSKKRGRESLDAMQTMTKEGSSLLFACMGGVPPTNVHSPRVTIAHNMGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEHAMRLQAEAVQLAKLQYLHYLIQSSNSLSTNSYDQKATTNNMEPFSLINSISNVKENPVILQPDAPASFSHGIASSQPLHHPNVLPHLLDPRVSFSSQSCLNSEMGPGTNFAMISQGDHTVDPDSSWIIPSMPPNAIGILANNPGDASSSTSSYGGGPSSYWPELFFEDPIMHELS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01176 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 163 IPR017930 -
Spst9g01176 379 Gene3D - 60 113 - -
Spst9g01176 379 SUPERFAMILY Homeodomain-like 58 155 IPR009057 -
Spst9g01176 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 48 253 - -
Spst9g01176 379 SMART sant 60 110 IPR001005 -
Spst9g01176 379 SMART sant 113 161 IPR001005 -
Spst9g01176 379 FunFam MYB-related transcription factor 60 113 - -
Spst9g01176 379 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Spst9g01176 379 CDD SANT 63 108 IPR001005 -
Spst9g01176 379 CDD SANT 116 159 IPR001005 -
Spst9g01176 379 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Spst9g01176 379 Pfam Myb-like DNA-binding domain 61 108 IPR001005 -
Spst9g01176 379 Gene3D - 116 163 - -
Spst9g01176 379 ProSiteProfiles Myb-like domain profile. 56 108 IPR001005 -
Spst9g01176 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 108 IPR017930 -
Spst9g01176 379 FunFam Transcription factor MYB39 116 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01176 Spst-Chr9 10806956 10809188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01176 48 379 MYB Transcription Factor Family AT1G34670 54.865 8.41e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g01176 Myb_DNA-binding 6.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01176 K09422 - gmx:100811162 593.964