Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01163 ATGAGTGAGACAGCGAGTCTTTATGCACAGACAAGGACACCCATTTCTTCTCTGGATGCCATGGCTCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACAACCTTCACCAAACTGTTCGTGGGAGGACTGGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGGGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGATTCGTAACATTCTGCGATCAAGAATCAGCAAAGAGAGCTTGTGCTGATCCAAACCCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAGCACAGAGTGTTCAGGGAGCGGGACCGGCGCCGTCGCTGCCGCCAGCAGCTGCTGTTCTGTATCCACCATATGGCTATACAACCTACACTCCTGATTATGGGTACCACCACCAAGCCACATTGTACAACCCACAGATTCAGCAAGCACAGTACTATCAACAGCAGCTATATGGAGCATCATCTTCCACCATGAGCACCCCATATTACTATGGTTACTCTGTGCAAGCACCAAGAAACACATTTTCTTCACCCCAAGCAAATCGCTTATCACCTGGACCATCTTATCTATACTATTCTAGCCCCGTGGAAGTCTCATTCTCTGCATATCGTCCACCCCAACAATCACCAATGAGGCAAACCTTTCCTTCTCCTAGTGGTAGAGATGATGCGCGAGTGAGAGAGACAGAGGTGCACACACAGAGAGATATGAATTATGATGCACTTACTGACACACTATATATTATGATTTGGCTGCAATATATGGGCATGGGGGTCCACATGGGCAACCACAGAGCCATGTGA 927 0.4822 MSETASLYAQTRTPISSLDAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESAKRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTAQSVQGAGPAPSLPPAAAVLYPPYGYTTYTPDYGYHHQATLYNPQIQQAQYYQQQLYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYSSPVEVSFSAYRPPQQSPMRQTFPSPSGRDDARVRETEVHTQRDMNYDALTDTLYIMIWLQYMGMGVHMGNHRAM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01163 308 SMART rrm1_1 39 111 IPR000504 GO:0003723
Spst9g01163 308 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
Spst9g01163 308 PANTHER BOULE-RELATED 18 253 - -
Spst9g01163 308 SUPERFAMILY RNA-binding domain, RBD 22 136 IPR035979 GO:0003676
Spst9g01163 308 CDD RRM_RBM24_RBM38_like 38 113 - -
Spst9g01163 308 Gene3D - 9 135 IPR012677 -
Spst9g01163 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Spst9g01163 308 MobiDBLite consensus disorder prediction 244 272 - -
Spst9g01163 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01163 Spst-Chr9 10657708 10660855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01163 34 114 C2H2 Transcription Factor Family AT2G19380 37.037 4.46e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01163 K25006 - gmx:100811977 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01163 9 10657708 10660855 Spst9g01163 9 10657708 10660855 ECH
Spst8g01229 8 11302014 11306453 Spst9g01163 9 10657708 10660855 PCT