Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01139 ATGGCGCTACTACGTGTTGTGTGCTTATCTTCATCAAATCAGTTTTCCACTCAACCCCATTCTTCCCTTTCCCAATCCATCAACTTCCCCAATCGCCCTTCCTTTCACCTTCCACGTTTATCCCTCACCACGACCAAACAAACCCCTAATTTCACTCTCACGTGCGTTTCCACTTCCCAGCAACAAACCGAGCCAGTTACAGAAGAAGAATTTTCAAGTACAAGGTTACTCGCTCAGAACGTGCCCTGGACAAGCACACCCGAGGATATTCGTTCTTTGTTTGAAAAACATGGAAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAGACAGAAACCGGGGTTTGGCCTTTGTCGAAATGGGTTCCCCAGAAGAGGCTCTCGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGTCGTGTAATGAAAGTCAATTATGCACGGCTGAAAAAGAAGAAAACGCCACCTCCGGTGAAACCAAAGTCTGGGGTGACGTTTAACTTGTTTGTTGGTAACTTGTCCTATGAAGCCAAGTCCAAGGATCTCAAGGAGTTTTTTGATTCTGGGACTGGTAAAGTTGTTAAAGCTGAGGTTGTCTTTGATGTAAATCCTAGAAAACCGTCTGGTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCCGAGGTTGCTCTTTCTGAGTTTCAAGGAAAGGATTTTATGGGAAGGCCAGTAAGGGTGGATCGTGGTCGGCGATTTGTTCAAAAACCAGGGGAGGGTAATGCAAAGTCTGAAGGTACTCCTTCTGAGTTGAGTGTAAATGGAGCAGAAGCTCAACAACCAGTAGAGGGGACTGCGAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAACTGATTGA 903 0.4518 MALLRVVCLSSSNQFSTQPHSSLSQSINFPNRPSFHLPRLSLTTTKQTPNFTLTCVSTSQQQTEPVTEEEFSSTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKDRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARLKKKKTPPPVKPKSGVTFNLFVGNLSYEAKSKDLKEFFDSGTGKVVKAEVVFDVNPRKPSGYGFVSFKTKKEAEVALSEFQGKDFMGRPVRVDRGRRFVQKPGEGNAKSEGTPSELSVNGAEAQQPVEGTANSEDTPELSVNGAEADKTD 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01139 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 240 IPR000504 GO:0003723
Spst9g01139 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Spst9g01139 300 SUPERFAMILY RNA-binding domain, RBD 59 159 IPR035979 GO:0003676
Spst9g01139 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Spst9g01139 300 SUPERFAMILY RNA-binding domain, RBD 167 258 IPR035979 GO:0003676
Spst9g01139 300 Gene3D - 156 263 IPR012677 -
Spst9g01139 300 CDD RRM_SF 80 147 - -
Spst9g01139 300 SMART rrm1_1 75 147 IPR000504 GO:0003723
Spst9g01139 300 SMART rrm1_1 169 243 IPR000504 GO:0003723
Spst9g01139 300 MobiDBLite consensus disorder prediction 260 289 - -
Spst9g01139 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 247 IPR000504 GO:0003723
Spst9g01139 300 MobiDBLite consensus disorder prediction 247 300 - -
Spst9g01139 300 PANTHER OS02G0815200 PROTEIN 57 244 - -
Spst9g01139 300 Gene3D - 54 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01139 Spst-Chr9 10446642 10448198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01139 73 250 Eukaryotic Initiation Factors Gene Family AT3G16380 29.897 1.83e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01139 - - gmx:100790439 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01139 9 10446642 10448198 Spst9g01139 9 10446642 10448198 ECH