Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01137 ATGGCACTAGAGGCTGTGGTTTTTCCACAAGATCCGTTTCCGTATGCTTGCAAGGATTACTTTTACTCCTTAGTAGGAGCAACACCCAACTTTGGTTATCAAGCTGCAGAAGAAGAGAAAGTCCTACTAGGAATCATCAACAACAACATAGAACACAATCTTCATGCAAACTGGGATTCTTCTTCTACCTACGTCTTGCAACATGTCAAGGAACAATGGGATGATTCTCACTCCTCCCCTGAAGCCTGCACCGTGGATCAATCCATGATTCCTCCCCCTTCTTCCTCCGTGGAAGTCACCGCGAGCAACATAACACGCCGCAAACGACGTCGTGCCAGGAGCGCCAAGAACAAAGAGGAAATCGAAAACCAGAGGATGACCCACATTGCAGTCGAACGCAACCGCAGAAAGCAGATGAACGAGTACTTAGCTGTACTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCGATCATTGGAGGAGCGATTAACTTTGTGAAGGAGTTAGAGCAGGTTTTGCAGTCAATGGAGGGTGGAAAGAGAACGAAGCAAGGACAAGAGAATGATGGGTTATCAAATGGGTCGACACCACCATTCGCTGAGTTCTTCACCTTTCCTCAATACACGACACGTGGAACGCAGAAGCAGGAGCAGAAACAGCGGGGCGTAGCAGACATTGAAGTGACCATGGTCGATAGTCATGCCAACCTAAAGATTCTCTCAAAGAAACAACCCGGCCATCTTATGAAGATCGTTGTTGGCCTTCAAAGTCTCAGACTTGGCATTCTCCACCTCAATGTTACCACTCTCCACAACATGGTCCTTTTCTCAATTAGCGTTAAGGTAGAAGAGGGGTGTGAGCTGAACACGGTGGATGAAATAGCGGGTGCAGTGAATCAACTATTACGCACAATCGAAGAAGTTACATTGAACTGA 951 0.4711 MALEAVVFPQDPFPYACKDYFYSLVGATPNFGYQAAEEEKVLLGIINNNIEHNLHANWDSSSTYVLQHVKEQWDDSHSSPEACTVDQSMIPPPSSSVEVTASNITRRKRRRARSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGGKRTKQGQENDGLSNGSTPPFAEFFTFPQYTTRGTQKQEQKQRGVADIEVTMVDSHANLKILSKKQPGHLMKIVVGLQSLRLGILHLNVTTLHNMVLFSISVKVEEGCELNTVDEIAGAVNQLLRTIEEVTLN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01137 316 CDD bHLH_AtFAMA_like 126 198 - -
Spst9g01137 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Spst9g01137 316 MobiDBLite consensus disorder prediction 182 201 - -
Spst9g01137 316 MobiDBLite consensus disorder prediction 77 97 - -
Spst9g01137 316 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Spst9g01137 316 Gene3D - 104 192 IPR036638 GO:0046983
Spst9g01137 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 187 IPR036638 GO:0046983
Spst9g01137 316 MobiDBLite consensus disorder prediction 181 201 - -
Spst9g01137 316 PANTHER MAX DIMERIZATION, MAD 72 312 - -
Spst9g01137 316 FunFam Basic helix-loop-helix transcription factor 114 189 - -
Spst9g01137 316 SMART finulus 129 180 IPR011598 GO:0046983
Spst9g01137 316 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01137 Spst-Chr9 10433149 10434282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01137 1 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 53.094 1.99e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g01137 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01137 - - gmx:100789380 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01137 9 10433149 10434282 Spst9g01137 9 10433149 10434282 ECH
Spst8g01193 8 10949779 10951257 Spst9g01137 9 10433149 10434282 PCT