Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01135 ATGACCACTCTCGCACTCAAAGCGCACTCCATTTTTCATCATGACCTTCTTTTCGTTTTTTGTTTTTCTTTTTTTCTCCTCACACACTTTCCGCCGCCGGCCGCCGCTCAGATACCCAACACGCTGACGCCGCCGCCGCCCGACCGCTTCTCGGGGTTGAAGTTCGACAAGTCCATGGCCATCGTTCTGGTGATCCTGGTTGTGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACTCGCCAGTGCGCGGAGCAACGGATGCGAGGAAGGTTCGACCTCTCCATCTCGATTGCGCGTCGGCAACGCGGTTTGGACCGCGAAATCGTCGACACCTTCCCTACCTTCGTTTACTCCACCGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGTGCAGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATACCCAAATGCAGCCACGTGTTCCACCCGGAGTGCATCGACGCGTGGCTCGTCAATCACTCCACTTGTCCCGTCTGTCGCGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTCTCCATCCAAATCCCCGATCCGGTTCAACCCGTTTTAAGCTCCCCGGTCCGTCCCGAAACCACGGATTCTCCGAAGACGAATGACTTGATTAATCACAACCGTTCACCTCGGTCAAGGTCAACGGGTTTCAACATCACGAGTTGGATCCCGCGGTCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGGGAGAATTGCGAGCGGTTTACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGAGTTCGACGACGCTGAGTCGCACCAAGAGTTGCGGCGTGGACGTGACTTTCACGCGCGAGAATAGTGAGAGGAGGACTTACAGGACGAGAAGCGTCGGTAACAGCCTTAGTCCTCACGTGACAAGAGGTCTCGGTGGCGCCACCAGCAGCCCTCACGTGCGGGGCTACGACAGGCGTTGGCTTTTTCGGAGCCCTTCACCGAAGGACCTCATTAAGGAAGATGTCGGGGAACGTTCTTCGGATCGCCTATTCTCGGACGCCTCAAGGAATACTCAGGAATAG 1092 0.5668 MTTLALKAHSIFHHDLLFVFCFSFFLLTHFPPPAAAQIPNTLTPPPPDRFSGLKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRMRGRFDLSISIARRQRGLDREIVDTFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHPECIDAWLVNHSTCPVCRANLVPKPDDPSFVSIQIPDPVQPVLSSPVRPETTDSPKTNDLINHNRSPRSRSTGFNITSWIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMSSTTLSRTKSCGVDVTFTRENSERRTYRTRSVGNSLSPHVTRGLGGATSSPHVRGYDRRWLFRSPSPKDLIKEDVGERSSDRLFSDASRNTQE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01135 363 CDD RING-H2_EL5-like 132 175 - -
Spst9g01135 363 MobiDBLite consensus disorder prediction 340 354 - -
Spst9g01135 363 Pfam Ring finger domain 132 175 IPR001841 -
Spst9g01135 363 SUPERFAMILY RING/U-box 127 183 - -
Spst9g01135 363 PANTHER RING FINGER DOMAIN-CONTAINING 44 183 - -
Spst9g01135 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 180 IPR013083 -
Spst9g01135 363 SMART ring_2 133 174 IPR001841 -
Spst9g01135 363 MobiDBLite consensus disorder prediction 297 321 - -
Spst9g01135 363 MobiDBLite consensus disorder prediction 198 235 - -
Spst9g01135 363 MobiDBLite consensus disorder prediction 340 363 - -
Spst9g01135 363 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Spst9g01135 363 MobiDBLite consensus disorder prediction 202 235 - -
Spst9g01135 363 FunFam E3 ubiquitin-protein ligase ATL6 94 181 - -
Spst9g01135 363 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01135 Spst-Chr9 10414790 10415881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01135 13 295 Rapid Response to Elicitors AT3G05200 40.604 2.35e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01135 K10664 - gmx:100805815 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01135 9 10414790 10415881 Spst9g01135 9 10414790 10415881 ECH
Spst8g01189 8 10902521 10903684 Spst9g01135 9 10414790 10415881 PCT